Pairwise Alignments
Query, 3263 a.a., type I secretion C-terminal target domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1434 a.a., Integrins alpha chain from Synechococcus elongatus PCC 7942
Score = 74.3 bits (181), Expect = 2e-16
Identities = 310/1385 (22%), Positives = 510/1385 (36%), Gaps = 233/1385 (16%)
Query: 1919 GQGIAEEVIHGSIGVKVNPIAEPDGQLLV---ENAGSVTQTVQADANGKIDFTINNVSG- 1974
G GIA+ ++ + +P GQ V + G + NG F IN ++
Sbjct: 111 GDGIADLIVGANYA---DPNGNLSGQSYVVFGSDQGFSAALNLSTLNGSNGFRINGIAAY 167
Query: 1975 GQAGANV-----IRFDNLDSNTAGSYQSD---ELVDQLVVSFGNVP--QEVLNQLLITGA 2024
Q+G +V + D +D G+Y +D L Q V FG+ LN + G+
Sbjct: 168 DQSGFSVSSAGDVNGDGIDDLIIGAYFADPNGNLSGQSYVVFGSDQGFSAALNLADLNGS 227
Query: 2025 INNGDGTWTITNEADFSIKAPNGLVYSSNNDPDKNGFNDIKITIT-AKVYDQGEDSSEVK 2083
NG + IT +D+S ++ +G D + +GF+D I + A S V
Sbjct: 228 --NGFASNGIT-ASDYSGRSVSGA-----GDVNGDGFDDFIIGASGADPNGSASGQSYVV 279
Query: 2084 ITKQVSTELTLSFPTEVTGNNSVAAQ-----------LNWVGDA-----DDLVIGK---- 2123
L+ ++ G+N A ++ GD DDL+IG
Sbjct: 280 FGSDQGFSAALNL-ADLNGSNGFAINGITAYDRSGFSVSGAGDVNGDGIDDLIIGAFGAD 338
Query: 2124 EDNTVNLGQQIQDKLMVNATGFDA---VAD---ELSIVIN---ASDLPAGASIGGQDFNF 2174
+ T + GQ + + GF A +AD IN A DL + G D N
Sbjct: 339 PNGTNSAGQSYV--VFGSDQGFSADLNLADLDGSNGFAINGIAAFDLSGFSVNGAGDVNG 396
Query: 2175 --VDGHYVFKGTLNPDGSISGLEGLVLIPPRDFAGDFKLPIT-----FVTTDTQSGDEKT 2227
+D + +P+G SG +V F+ D L F +GD
Sbjct: 397 DGIDDLIIGARNADPNGGASGQSYVVFGKKGGFSADLNLSALNGNNGFRINGIAAGDNSG 456
Query: 2228 LTAQVPVAISPVADVPSSSGDQPL--DNHVTPSITLNVQETLGLDANHQPT-DLANDTPT 2284
++S DV D L N+ P+ N ++ + N P DL
Sbjct: 457 ------TSVSNAGDVNGDGVDDLLIGANYADPNGNTNAGQSYVVFGNAAPVLDL------ 504
Query: 2285 QDGIAYED---GIVHLNLAIGLADS-LNGSTQGQEVLTEVTLTLNDTNSGVFVDANGQSL 2340
DG A + G V ++ + S L + L+ T+TL + G+ + +
Sbjct: 505 -DGAASAELNFGAVFTGTSVSVVGSGLTITDLNSPTLSAATVTLVNRPDGIAESLSATTT 563
Query: 2341 GTSITLTQAELPAALGEIYFKPAPNYPSGNDINTVGMTVTGKVTDSTVFDETNASLQGVS 2400
GTSIT T L +Y + +V T T D D ++ +++ V
Sbjct: 564 GTSITATYDSNTGVLLLSGLASVEDYQQV--LRSVTYTNTSNAAD---LDVSHRTIEFVL 618
Query: 2401 SSDADKTFTSQVSFEVKPVVDDITIGSGSPISVTGDEDSWIALADQGNAFNVS---LNDN 2457
AD TS V V V + + SV+ ++ D GN F ++ ND
Sbjct: 619 DDGADFANTSAV---VTTSVTVLRLPLADKASVS------LSSLDGGNGFRITGIAANDF 669
Query: 2458 DGSEQFVSLVLTGLPTDFLVKSLSSDYVVKNNGGGEWSVQIRNPNLTSLDLSALAIKPTK 2517
GS + + G D L+ N G+ V + S DL+ ++ +
Sbjct: 670 SGSSVSNAGDVNGDGIDDLIIGARDADPNGTNSAGQSYVVFGSDQGFSADLNLSSLDGSN 729
Query: 2518 DFSGEVQLGIKVFTQESLLGEPVEHTGQFTLNVTPIGDDVDIAPITNVVGNEGQAIDISL 2577
F+ GI + G V G GD VD D+ +
Sbjct: 730 GFAIN---GIAAYDYS---GRSVSGAGDVN------GDGVD---------------DLII 762
Query: 2578 GAQILDKAPSLPGGVTYTENSPETLRVEISGVPDGAFLSLADGTLGTSLGG-------GV 2630
GA D +L G S + +++ LS DG+ G ++ G G
Sbjct: 763 GAFGADPNGNLSGQSYVVFGSDQGFSADLN-------LSSLDGSNGFAINGIAADDFSGF 815
Query: 2631 WVF---EINAQQLDKVVFNSGDNNQLNWNGNLHFKVQSVDTGLAGDQHLGSAQEFD-VHV 2686
V ++N +D ++ + + + V D G + D +L + +
Sbjct: 816 SVSSAGDVNGDGIDDLIIGASLADPNGARSGQSYVVFGSDQGFSADLNLADLNGTNGFRI 875
Query: 2687 DVTAVNDRP--ELINVQDQVTEEDTPLLLNSFTLA-----------------DIDAQLDD 2727
+ AVND+ + D + L++ +F D D +L+
Sbjct: 876 NGIAVNDQSGFSVSGAGDVNGDGIDDLIIGAFLADPNGNYSGQSYVVFGKTDDFDTELNL 935
Query: 2728 PNADYTLQIGVNSGVLIIDSS---LSSGLTIQGDGTGALSITGNVAEINA---AIGAGLV 2781
+ D + +N G+ + D S +S + GDG L I A ++ A AG
Sbjct: 936 ADLDGSNGFRIN-GIAVNDQSGFSVSGAGDVNGDGINDLIIGALGASPHSNTNATNAGQT 994
Query: 2782 KFVPSPDFYGQVAVTLNVNDNGNAGSEIAGDASTAHDNSAQFVIDVTAVNDKPEVDGIHL 2841
V D + L+ NG G I G TA D S + V VN D I
Sbjct: 995 YVVFGSDQGFSADLNLSAL-NGRNGFAING--ITAGDESGRSVSGAGDVNGDGIDDLIIG 1051
Query: 2842 TAQID---EASGQKLTGITVSDVDYAGSHTNDVMKVTLSISEGILSVQAPAGSSVAVSYA 2898
+ D SGQ A + +D+ V GI + GSSV+ +
Sbjct: 1052 ASNADPNGNFSGQSYVVFGKKGGFAAELNLSDLNGVNGFAINGITAGDG-FGSSVSGAGD 1110
Query: 2899 LDGSVI---LEGSPEAINALLNHSDSAYGLFVDATAIAGTQINLTVTAQDMGVYFENASG 2955
++G I L G+P A + + S +Y +F +A + T + G F
Sbjct: 1111 VNGDGIDDLLIGAPTA-DPNGSQSGQSYVVFGNAAPVLDLD-GTTSPELNFGAVFTGTPV 1168
Query: 2956 MALEESKTYPIQVNPVANAPSLSM-NPAFGYAQQIYANQSLSA--------QGIALLGAI 3006
+ T +P A ++++ N G A+ + A +A G+ LL +
Sbjct: 1169 SVVGSGLTITDLNSPTLAAATVTLVNRPDGIAESLSAITDGTAIKASYDSNTGVLLLVGL 1228
Query: 3007 AALTDLHETLSLRVDHLPAGASLSSTAGSVTDLGNGRWEVSPDALESLKVVGLDEGVHTL 3066
A + D + L + ++T+ + DL +VS +E + LD+G
Sbjct: 1229 ATVADYEKVLRT--------VTYTNTSNAA-DL-----DVSRRTIEFV----LDDGADFA 1270
Query: 3067 SLTALSTESDGSSAPSANSIDYRIEIAADGSLLDHRSATDDSLLVAGNSGMTLLSG-SGD 3125
+ +A+ T ++ ++ E+ + + T + G+ G L++G G+
Sbjct: 1271 NTSAVVT----------TTLSFKNEV-------NTITGTPRLDFLRGSKGDDLITGLGGN 1313
Query: 3126 DFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDKVDHIRDFNVNEGDSIDLIDV 3185
DF+ G AG+D L+GGLG+D+L GG G D F +T V + D I DFN + D +DL +
Sbjct: 1314 DFLFGRAGNDTLIGGLGSDVLSGGAGKDRFVYT--AVTEARDLIIDFNAKQ-DVLDLSGL 1370
Query: 3186 VQDLG 3190
+ LG
Sbjct: 1371 LDSLG 1375
Score = 40.4 bits (93), Expect = 3e-06
Identities = 205/812 (25%), Positives = 293/812 (36%), Gaps = 167/812 (20%)
Query: 356 DLPAGSDGADPL-TVSGQFDTQLGSDQVASYQIDPSTANPIAG---------------LT 399
DL G++ ADP +SGQ GSDQ S ++ ST N G ++
Sbjct: 116 DLIVGANYADPNGNLSGQSYVVFGSDQGFSAALNLSTLNGSNGFRINGIAAYDQSGFSVS 175
Query: 400 SQGDAVILGEPTLIDGNRVYQATAGGRDIFQLTLNADGSYQFVLQGTLDHAAGSDALTIS 459
S GD G LI G Y A G Q + F L GS+ S
Sbjct: 176 SAGDVNGDGIDDLIIG--AYFADPNGNLSGQSYVVFGSDQGFSAALNLADLNGSNGFA-S 232
Query: 460 LPIVAIDYDNDS-SAPGNLNIEIQDDKPIIIGAEQL-----TVAEQTLDTGSIGG--GAS 511
I A DY S S G++N + DD IIGA + + GS G A
Sbjct: 233 NGITASDYSGRSVSGAGDVNGDGFDD--FIIGASGADPNGSASGQSYVVFGSDQGFSAAL 290
Query: 512 LVADGNFTTTQGSDGVVSYRLDSLTDSVAGITSG-GVAVTLSESVDANGNYTYTA----- 565
+AD N + +G+ +Y + S AG +G G+ + + A+ N T +A
Sbjct: 291 NLADLNGSNGFAINGITAYDRSGFSVSGAGDVNGDGIDDLIIGAFGADPNGTNSAGQSYV 350
Query: 566 TAGGEPVFTLLLNQ---DGSYRFTLQGSLDHALNSDELLVNFTVV-ATDFDGDTASITLP 621
G + F+ LN DGS F + G L+ F+V A D +GD
Sbjct: 351 VFGSDQGFSADLNLADLDGSNGFAINGIAAFDLSG------FSVNGAGDVNGDGI----- 399
Query: 622 VTVKDDKPYFTNVTSLNVHENDLPQGSDVTKEPLTASGQFELVQGSDRVASFTLD-SSVN 680
+DL G+ ASGQ +V G S L+ S++N
Sbjct: 400 --------------------DDLIIGARNADPNGGASGQSYVVFGKKGGFSADLNLSALN 439
Query: 681 PVQGLTSNGVAV-----TLSAPVDDGHGNLTYTAMAGAVTVFTLTLNTDGTYSFTL---A 732
G NG+A T + D +G+ + GA NT+ S+ + A
Sbjct: 440 GNNGFRINGIAAGDNSGTSVSNAGDVNGDGVDDLLIGA-NYADPNGNTNAGQSYVVFGNA 498
Query: 733 APVDHALNSNDLTLNFQVIATDFDGDSDSIVLPVKINDDKPYFTNVQGLYVHENDLPQGS 792
APV + LNF + F G S S+V GL + + + P S
Sbjct: 499 APVLDLDGAASAELNFGAV---FTGTSVSVV--------------GSGLTITDLNSPTLS 541
Query: 793 DTDKEPVTVNGQFQLVQGADTVASFALDSSVNPVQGLTSNGVAVTLSAPVDDGNGNLTYT 852
TV LV D +A + L++ +++A D G L +
Sbjct: 542 -----AATVT----LVNRPDGIA-----------ESLSATTTGTSITATYDSNTGVLLLS 581
Query: 853 AMAGSVTVFTLTLNSDGTYSFTLAAPVEHALNSDSLTLNFKVI-ATDFDGDTASIVLPVT 911
+A SV + L S TY+ T A L+ T+ F + DF +A + VT
Sbjct: 582 GLA-SVEDYQQVLRSV-TYTNTSNAA---DLDVSHRTIEFVLDDGADFANTSAVVTTSVT 636
Query: 912 VLDDQPSVISAQALSVNEDDLATGTDQSKESTTANGQFTTTQGADGIAHYQIDTSTSSNT 971
VL LA S S F T GIA S+ SN
Sbjct: 637 VL---------------RLPLADKASVSLSSLDGGNGFRIT----GIAANDFSGSSVSNA 677
Query: 972 G-LTSQG-QPVVWGAPSIT---TTSSGQVYTYQGIANGVVIFTLVLRADGSYSFTLNGAV 1026
G + G ++ GA T S+GQ Y G G + DGS F +NG
Sbjct: 678 GDVNGDGIDDLIIGARDADPNGTNSAGQSYVVFGSDQGFSADLNLSSLDGSNGFAINGIA 737
Query: 1027 DHPLNANELTLNIPVLAQDADGDTSPITLPVTIVDDVPI-----LHDKNIALQEGSVASS 1081
+ + ++ A D +GD VDD+ I + N++ Q V S
Sbjct: 738 AYDYSGRSVS-----GAGDVNGDG---------VDDLIIGAFGADPNGNLSGQSYVVFGS 783
Query: 1082 VNLFSRDNNLSPDTQGADRGVITHFSAVDEAG 1113
FS D NLS G++ I +A D +G
Sbjct: 784 DQGFSADLNLS-SLDGSNGFAINGIAADDFSG 814
Score = 30.0 bits (66), Expect = 0.004
Identities = 206/997 (20%), Positives = 328/997 (32%), Gaps = 174/997 (17%)
Query: 1670 GVITTVAEDSLVDLNFSIISGEIADSPTDSSETISVLLSNIPDGVKLFDSDGTSVDLVFA 1729
G + T S+V +I +SPT S+ T++++ N PDG+ S T+ + A
Sbjct: 515 GAVFTGTSVSVVGSGLTITD---LNSPTLSAATVTLV--NRPDGIAESLSATTTGTSITA 569
Query: 1730 GYDSNHKPIYQANLTVA---QVVTGIQVQPVASSTANIDIK-ATVIVTENDGH------- 1778
YDSN + + L Q V S+ A++D+ T+ +DG
Sbjct: 570 TYDSNTGVLLLSGLASVEDYQQVLRSVTYTNTSNAADLDVSHRTIEFVLDDGADFANTSA 629
Query: 1779 -VRQVEETIRILVEPKIDVT----------------------ENYHNAVSGNEDDRIHVT 1815
V +R+ + K V+ + NA N D +
Sbjct: 630 VVTTSVTVLRLPLADKASVSLSSLDGGNGFRITGIAANDFSGSSVSNAGDVNGDGIDDLI 689
Query: 1816 WVPQNTPGNIQNPDAQEYFSRVEISGFP--------DGSRVFVNNVEVTL---------- 1857
++ N N Q Y GF DGS F N
Sbjct: 690 IGARDADPNGTNSAGQSYVVFGSDQGFSADLNLSSLDGSNGFAINGIAAYDYSGRSVSGA 749
Query: 1858 --INGVLVLEPAAGQSDLDFSNQVSAAGYIQVIPPHNSSTDFTLST-------AITVKEQ 1908
+NG V + G D + +S Y+ S D LS+ AI
Sbjct: 750 GDVNGDGVDDLIIGAFGADPNGNLSGQSYVVFGSDQGFSADLNLSSLDGSNGFAINGIAA 809
Query: 1909 D----HEYVDAGN-PGQGIAEEVIHGSIGVKVNPIAEPDGQLLV---ENAGSVTQTVQAD 1960
D AG+ G GI + +I S+ +P GQ V + G AD
Sbjct: 810 DDFSGFSVSSAGDVNGDGIDDLIIGASL---ADPNGARSGQSYVVFGSDQGFSADLNLAD 866
Query: 1961 ANGKIDFTINNVSGGQ------AGANVIRFDNLDSNTAGSYQSD---ELVDQLVVSFGNV 2011
NG F IN ++ +GA + D +D G++ +D Q V FG
Sbjct: 867 LNGTNGFRINGIAVNDQSGFSVSGAGDVNGDGIDDLIIGAFLADPNGNYSGQSYVVFGKT 926
Query: 2012 P--QEVLNQLLITGAINNGDGTWTITNEADFSIKAPNGLVYSSNNDPDKNGFNDIKITIT 2069
LN + G+ + +++ FS+ S D + +G ND+ I
Sbjct: 927 DDFDTELNLADLDGSNGFRINGIAVNDQSGFSV--------SGAGDVNGDGINDLIIGAL 978
Query: 2070 AKVYDQGEDSSEVKITKQV-------STELTLSFPTEVTGNNSVAAQLNWVGDADDLVIG 2122
+++ T V S +L LS + G N A GD
Sbjct: 979 GASPHSNTNATNAGQTYVVFGSDQGFSADLNLS---ALNGRNGFAINGITAGDES----- 1030
Query: 2123 KEDNTVNLGQQIQDKLMVNATGFDAVADELSIVINASDLPAGASIGGQDFNFVDGHYVFK 2182
G+ + VN G D ++I AS+ + GQ + F
Sbjct: 1031 --------GRSVSGAGDVNGDGID------DLIIGASNADPNGNFSGQSYVVFGKKGGFA 1076
Query: 2183 GTLNPDGSISGLEGLVLIPPRDFAGDFKLPITFVTTDTQSGDEKTLTAQVPVAISPVADV 2242
LN ++G+ G + AGD F ++ + +GD + +P AD
Sbjct: 1077 AELNL-SDLNGVNGFAI--NGITAGD-----GFGSSVSGAGDVNGDGIDDLLIGAPTAD- 1127
Query: 2243 PSSSGDQPLDNHVTPSITLNVQETLGLDANHQPTDLANDTPTQDGIAYEDGIVHLNLAIG 2302
+G Q ++V + N L LD P G V +
Sbjct: 1128 --PNGSQSGQSYV---VFGNAAPVLDLDGTTSP-------------ELNFGAVFTGTPVS 1169
Query: 2303 LADS-LNGSTQGQEVLTEVTLTLNDTNSGVFVDANGQSLGTSITLTQAELPAALGEIYFK 2361
+ S L + L T+TL + G+ + + GT+I + L +
Sbjct: 1170 VVGSGLTITDLNSPTLAAATVTLVNRPDGIAESLSAITDGTAIKASYDSNTGVLLLVGLA 1229
Query: 2362 PAPNYPSGNDINTVGMTVTGKVTDSTVFDETNASLQGVSSSDADKTFTSQVSFEVKPVVD 2421
+Y + TV T T D D + +++ V AD TS V +
Sbjct: 1230 TVADYE--KVLRTVTYTNTSNAAD---LDVSRRTIEFVLDDGADFANTSAVVTTTLSFKN 1284
Query: 2422 DITIGSGSP--ISVTGDEDSWIALADQGNAFNVSLNDNDGSEQFVSLVLTGLPTDFLVKS 2479
++ +G+P + G + + GN F ND ++ GL +D L
Sbjct: 1285 EVNTITGTPRLDFLRGSKGDDLITGLGGNDFLFGRAGND-------TLIGGLGSDVLSGG 1337
Query: 2480 LSSDYVVKNNGGGEWSVQIR-NPNLTSLDLSALAIKPTKDFSGEVQLGIKVFTQESLLGE 2538
D V + I N LDLS L S V + +S LG
Sbjct: 1338 AGKDRFVYTAVTEARDLIIDFNAKQDVLDLSGLLDSLGYQGSNPVADQVLRLNSQSFLGT 1397
Query: 2539 PVEHTGQFTLNVTPIGDDVDIAPITNVVGNEGQAIDI 2575
V ++NV +G D + ++G A+ I
Sbjct: 1398 TV------SVNVAGLGGVPDFVSLVTLLGVSSSALVI 1428
Score = 28.9 bits (63), Expect = 0.009
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 786 NDLPQGSDTDKEPVTVNGQFQLVQGADTVASFALD-SSVNPVQGLTSNGVAV-----TLS 839
+DL G+ +GQ +V G + L+ S +N V G NG+ +
Sbjct: 1046 DDLIIGASNADPNGNFSGQSYVVFGKKGGFAAELNLSDLNGVNGFAINGITAGDGFGSSV 1105
Query: 840 APVDDGNGNLTYTAMAGSVTVFTLTLNSDGTYS-FTLAAPVEHALNSDSLTLNFKVIATD 898
+ D NG+ + G+ T S +Y F AAPV + S LNF +
Sbjct: 1106 SGAGDVNGDGIDDLLIGAPTADPNGSQSGQSYVVFGNAAPVLDLDGTTSPELNFGAV--- 1162
Query: 899 FDGDTASIV---LPVTVLDDQPSVISAQALSVNEDD-----LATGTDQS--KESTTANGQ 948
F G S+V L +T L + P++ +A VN D L+ TD + K S +N
Sbjct: 1163 FTGTPVSVVGSGLTITDL-NSPTLAAATVTLVNRPDGIAESLSAITDGTAIKASYDSNTG 1221
Query: 949 FTTTQGADGIAHYQ--IDTSTSSNT 971
G +A Y+ + T T +NT
Sbjct: 1222 VLLLVGLATVADYEKVLRTVTYTNT 1246