Pairwise Alignments

Query, 3263 a.a., type I secretion C-terminal target domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 61.6 bits (148), Expect = 4e-13
 Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 3107 DSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGV--DD 3164
            D +LV G+   +LL G G+D + G    D L+GG GAD+L GG+ AD F W    V  D 
Sbjct: 385  DDILVGGSGADSLLGGDGNDSLSGEYHSDRLLGGAGADLLTGGSDADTFIWDEASVRNDR 444

Query: 3165 KVDHIRDFNVNEGD 3178
             VD I DF   +GD
Sbjct: 445  SVDRITDFRGGDGD 458



 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 3106 DDSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDK 3165
            DD ++  G S + + +G+GDD V+ G GDD +  G G D+L GG G D F  T  G DD 
Sbjct: 133  DDRIIATGFSFVHVHTGAGDDRVETGIGDDQIYAGDGRDLLFGG-GGDDFIHTGQG-DDY 190

Query: 3166 VDHIRDFNVNEGD 3178
            V+   D +  EG+
Sbjct: 191  VNGGNDDDRLEGE 203



 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 3109 LLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDKVDH 3168
            LL  G     + +G GDD+V GG  DD L G  G D LVGG G D     LDG       
Sbjct: 172  LLFGGGGDDFIHTGQGDDYVNGGNDDDRLEGEDGNDSLVGGRGND----RLDGGSG---- 223

Query: 3169 IRDFNVNEGDSID 3181
              D +VN GD  D
Sbjct: 224  --DDDVNGGDGND 234



 Score = 43.1 bits (100), Expect = 2e-07
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 3106 DDSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGAD 3153
            DD  L   +   +L+ G G+D + GG+GDD + GG G D L GG G+D
Sbjct: 196  DDDRLEGEDGNDSLVGGRGNDRLDGGSGDDDVNGGDGNDSLTGGLGSD 243



 Score = 42.7 bits (99), Expect = 2e-07
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 3122 GSGDDFVQGGAGDDVLVGGLGADILVGGTGAD 3153
            G+GDDFV GGAGDD L    G D   GG G D
Sbjct: 34   GAGDDFVDGGAGDDALTSSSGFDEFTGGEGND 65



 Score = 34.3 bits (77), Expect = 7e-05
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 3107 DSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGAD 3153
            D  +  GN    L    G+D + GG G+D L GG G D + GG G D
Sbjct: 188  DDYVNGGNDDDRLEGEDGNDSLVGGRGNDRLDGGSGDDDVNGGDGND 234



 Score = 29.6 bits (65), Expect = 0.002
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 2305 DSLNGSTQGQEVLTEVTLTLNDTNSGVFVDAN--GQSLGTSITLTQA----ELPAALGE- 2357
            D   G+  G E     ++ L+D ++G  +DA+  G     +IT+  A     L    G  
Sbjct: 302  DGSLGALDGGEGFDRASIALDDVSAGFVLDASRFGSIEEFNITVKSAYRGVHLSGGNGND 361

Query: 2358 --IYFKPAPNYPSGNDI----NTVGMTVTGKVTDSTVFDETNASLQGVSSSD 2403
                F      PSGND+    N   + V G   DS +  + N SL G   SD
Sbjct: 362  RLFCFDTYREGPSGNDVLNGRNGDDILVGGSGADSLLGGDGNDSLSGEYHSD 413