Pairwise Alignments

Query, 326 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 115 ILNKDPEPYRMLINGFAKIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEE 174
           +++K   P   +    ++  R +  I   + RD LTGLLN   +    RH   IN +   
Sbjct: 353 LISKQTAPSLFVTQVISRAQRGHD-IRSSASRDSLTGLLNHTQILVAARH--CINLAKRA 409

Query: 175 NHKLWIAMLDIDHFKAINDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFS 234
           N  + IAMLD+DHFK +ND +GH  GD++LL FA  +Q     +  + R+GGEEF+++  
Sbjct: 410 NSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFAHLLQQSLRAADFMGRYGGEEFMLVIP 469

Query: 235 SGNEPQIKQQLDGFRQQIRRHNFPRIG---ELSFSAGFCSLRPGDYLPTILDHADKALYY 291
               P +  +++  R+      F   G   +++ S G             L  ADK LY 
Sbjct: 470 DMPAPLVIAKVNAIRESFSNIVFVEEGAEFKVTLSGGLAFSTECHEFQECLLLADKNLYE 529

Query: 292 AKEHGRNQV 300
           AK  GRN++
Sbjct: 530 AKRTGRNRI 538