Pairwise Alignments

Query, 324 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (327), Expect = 4e-35
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 9/305 (2%)

Query: 20  MDYIHLSRFSLKHLTALHVMLNTRSVTQTAARLCVSPSSISKILAQLRELLNDDLFYRDG 79
           M+  +L+R  L  L  L V+L  RSVT+ A+RL +S S++SK L +LR+ L D LF R  
Sbjct: 1   MNLDNLARIDLNLLVMLQVLLEERSVTRAASRLHLSQSALSKSLNRLRDTLGDPLFIRTA 60

Query: 80  NQLIPTPYVQQMGPTVHHVLSSMNGLLHCTEFDPQAYQGHYRLAMRESTFELFAPKVTAI 139
           + L PT +   +G  +  +L  +  L     F+P + +  +  AM ES +E   P     
Sbjct: 61  HGLKPTAHAALLGQQLPDMLQGLYQLTQPPSFNPASSRRQFSFAMVESAYETLIPYFIGP 120

Query: 140 LAACSSELSMTIHSKEHYGFEALQSGLIDCILLPHDISQPPTFAQD-----LVWQVIESD 194
           L   +  L +  +        +LQ G ID  +   DI+       D     +  Q + +D
Sbjct: 121 LLNNAPNLRLDSYLWTEKSLSSLQKGQIDFGITGRDINPQSDLIIDRLPEGIAHQTLFTD 180

Query: 195 ELVCLMSADHPLAHA----ELSVDAYLAYKHIGILDNELNEPYFEKYLTQQHETRRIAVA 250
             VCL+   HP+  A    +  +D YL   H+ +          + +L +  + R ++  
Sbjct: 181 HQVCLVRQGHPMLPAIRNHQWDLDIYLEMSHVQVRCEGNEWWALDYFLAKSGQRRHLSTT 240

Query: 251 TPDFGAAAILCRQTHLLLTCSKRWADHAMQAQGLVQKTLPFEYGKVAYSLVWNKPSMNDR 310
            PDF  AA +C  + L+ T    +A HA +   L +  LPF++  +AY L+W++ + ++ 
Sbjct: 241 VPDFYGAASVCAHSDLIFTLPSSFAAHARKLYALEELPLPFDFHSLAYVLLWHERNDDEP 300

Query: 311 AIRWL 315
             +W+
Sbjct: 301 GHKWI 305