Pairwise Alignments

Query, 324 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  115 bits (288), Expect = 1e-30
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 13/296 (4%)

Query: 23  IHLSRFSLKHLTALHVMLNTRSVTQTAARLCVSPSSISKILAQLRELLNDDLFYRDGNQL 82
           + L    L        +   R++T+ A RLC++  ++S  L++LR  LND LF R    +
Sbjct: 1   MRLQNVDLNLFVVFDAIYTERNLTRAAERLCITQPAVSNALSRLRTSLNDPLFIRTPKAM 60

Query: 83  IPTPYVQQMGPTVHHVLSSMNGLLHCTE-FDPQAYQGHYRLAMRESTFELFAPKVTAILA 141
           +PTP  + M   V   L  ++  +H  + FDP   + H++L M + T E   P + A L 
Sbjct: 61  MPTPVAENMIGQVREALKLLSSSMHLGDSFDPLLAEHHFQLGMFDVTEETMLPSLLAALQ 120

Query: 142 ACSSELSMTIH--SKEHYGFEALQSGLIDCILLPHDISQPPTFAQDLVWQVIESDELVCL 199
             +  LS++ +  S+E    +   SG +D  +    ++ P  +   LV     +   VCL
Sbjct: 121 VHAPRLSISSYPVSREEM-LKEFVSGRLDLAIDAPIVTHPDLYHHPLV-----TVPYVCL 174

Query: 200 MSADHPLAHAELSVDAYLAYKHIGILDNELNEPYFEKYLTQQHETRRIAVATPDFGAAAI 259
           +  DHP     LS++ YLA  H+ +        Y +  L +  + R I V T    AA  
Sbjct: 175 VRKDHPEVGDTLSLEQYLALSHVHVSSRRQGVGYVDAALNRLGKHRNIQVRTKHHQAAPK 234

Query: 260 LCRQTHLLLTCSKRWADHAMQAQGLVQKTLPFEYGKVAYSLVWNKPSMNDRAIRWL 315
           L  +T+L  T  +  A +      L    LPFE   + + L W++ +  D A RWL
Sbjct: 235 LVAETNLATTVPESLAKNT----DLKVLKLPFEVEPIEWHLYWHRSADQDNANRWL 286