Pairwise Alignments

Query, 324 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  127 bits (319), Expect = 3e-34
 Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 5/296 (1%)

Query: 25  LSRFSLKHLTALHVMLNTRSVTQTAARLCVSPSSISKILAQLRELLNDDLFYRDGNQLIP 84
           +  F    L  L V+L  +SVT  A RL +S S++SK L +LR+  +D LF R  + L P
Sbjct: 1   MKAFDFNLLPLLEVLLEEQSVTAAAERLHLSQSAVSKQLNKLRDSFDDQLFERTAHGLRP 60

Query: 85  TPYVQQMGPTVHHVLSSMNGLLHCTEFDPQAYQGHYRLAMRESTFELFAPKVTAILAACS 144
           TP  +Q+GP +  +LS ++ L   ++FDP      +RL + E+ + L  P+    L   +
Sbjct: 61  TPKAKQLGPEIRQILSQVSSLTRPSDFDPSKSHRRFRLELVETAYSLTYPRFMPKLLKQA 120

Query: 145 SELSMTIHSKEHYGFEALQSGLIDCILL-----PHDISQPPTFAQDLVWQVIESDELVCL 199
            ++++  H+      E L     D  +         +         L +  +  D  +CL
Sbjct: 121 PKITLDSHTWHSESMERLLRCDTDLGIACREWDERSLQHVNNLPSALRFVELTRDHSLCL 180

Query: 200 MSADHPLAHAELSVDAYLAYKHIGILDNELNEPYFEKYLTQQHETRRIAVATPDFGAAAI 259
           +   HPL   E ++  +L Y+H+ +    ++    +  L  +H  R IAV   DF +A  
Sbjct: 181 VREGHPLLQEEWNLSTFLKYRHLQVTFGGISHWLLDDVLQMKHLKRDIAVNLTDFNSAMQ 240

Query: 260 LCRQTHLLLTCSKRWADHAMQAQGLVQKTLPFEYGKVAYSLVWNKPSMNDRAIRWL 315
           LC Q+ L+L    ++A   M    LV   +P +     Y L+W+K    D + RWL
Sbjct: 241 LCEQSDLILCSPAKYAKVMMGQFKLVSLPIPTQMVPGTYLLLWHKHFDLDPSHRWL 296