Pairwise Alignments

Query, 516 a.a., cryptochrome/photolyase family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., Uncharacterized protein related to deoxyribodipyrimidine photolyase from Pseudomonas stutzeri RCH2

 Score =  378 bits (970), Expect = e-109
 Identities = 208/522 (39%), Positives = 296/522 (56%), Gaps = 22/522 (4%)

Query: 1   MRYSVVRLILGDQLNH---AHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQCAFFAAMQ 57
           M  + +RL+LGDQL+    A       RD VL  +AE+  E  +V HH QK    F+AM+
Sbjct: 1   MSIAALRLVLGDQLSFDLSALEGLDLARDRVL--LAEVADEVSHVPHHPQKIAFIFSAMR 58

Query: 58  AFADYLSAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRLLEQMANL 117
            FA+ L   G  V ++ LD  A    L   + +  +  +  +       ++R+      L
Sbjct: 59  HFAEALRQRGVSVDYVALDDPANSGSLAGELTRFARLQRPQSIHVTETGDWRVEHA---L 115

Query: 118 RLSGITIGCVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQW 177
           +  G+ I   +   F+    E          + ME FYR MR++ G L+  DG PEGG W
Sbjct: 116 KGCGLPITWHEDRRFICSRGEFARWAHGKPQLRMEFFYREMRRKTGLLLQPDGAPEGGVW 175

Query: 178 NFDADNRNKLK----SPDLLQLPTPLCFDNPVASIKARIERHRIPSIGQVGESLLWPINR 233
           N DADNR  L      P +L+        + +A ++AR   H     G++ +   +P+  
Sbjct: 176 NLDADNRKPLPRGLHGPIVLRFAADSITRDVLALVQARFAHH----YGRL-DGFDYPVTH 230

Query: 234 AQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATIS 293
           A+A  L  HF    L  FG +QDAM +  P    L+H+R+  ALN  LL  R + +   +
Sbjct: 231 AEAEQLWLHFLDFGLAAFGDYQDAMASGEPF---LFHARIGAALNVGLLDLRRLCDDVEA 287

Query: 294 AYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQT 353
           AYR  QG+I+L   EGF+RQ++GWREYVRG+YW  MP Y  RN  G  RPLP ++W+GQT
Sbjct: 288 AYR--QGRIALNAAEGFIRQLIGWREYVRGIYWLRMPDYAKRNAFGNTRPLPEFYWSGQT 345

Query: 354 KMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGIYIDAIEWVELPN 413
           +M C++Q I Q+LD  YAHHIQRLMVTGNFALL    P  +  WYL +Y+DA +WVELPN
Sbjct: 346 RMNCMRQVIGQTLDHAYAHHIQRLMVTGNFALLAGIAPPALCDWYLAVYMDAFDWVELPN 405

Query: 414 TRGMALFADGGLIATKPYSASGSYINKMSDYCASCAYQVKLKSGEKACPLNSLYWRFMLK 473
             GM L ADGG + +KPY ASG YI +MSDYC  C Y+V   + + ACP N+LYW F+++
Sbjct: 406 VLGMVLHADGGYLGSKPYCASGQYIRRMSDYCQDCPYKVSESTTDDACPFNALYWHFLMR 465

Query: 474 HRDRLANNPRIGMLYKTWDKMTSDSQQAILSTADAYLSQIES 515
           HR+ L  NPR+ M+Y+   +M    Q+A+    +  L+++++
Sbjct: 466 HRELLRVNPRMTMVYRNLARMAESKQRALWQRGEILLARLDA 507