Pairwise Alignments

Query, 516 a.a., cryptochrome/photolyase family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  322 bits (825), Expect = 2e-92
 Identities = 192/504 (38%), Positives = 268/504 (53%), Gaps = 21/504 (4%)

Query: 9   ILGDQLNHAHSWFSEHRDD---VLYLIAELHQEQEYVRHHIQKQCAFFAAMQAFADYLSA 65
           ILGDQL   H   S    D      L+ E  +  +   +H QK    ++AM+ FAD L +
Sbjct: 7   ILGDQLTLQHPALSSRAVDQSQTRILLVESLEHAQRRPYHRQKLVLLWSAMRHFADELRS 66

Query: 66  EGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRLLEQMANLRLSGITIG 125
           +G  V +++     Q +     ++  CQQ Q    Q   P +      +++L L+  ++ 
Sbjct: 67  QGWTVDYVE-----QADSFQTAVSAWCQQYQIAELQVMEPADRSFRAIISSLELTS-SLH 120

Query: 126 CVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQWNFDADNRN 185
            +    FL   AE        + + +E+FYR  RKR+  L+T D +P GGQWNFD +NR 
Sbjct: 121 WLSNCQFLWSTAEFTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENR- 179

Query: 186 KLKSPDLLQLPTPLCFDNPVASIKARIERHR---IPSIGQVGESLLWPINRAQALSLLAH 242
             K P     P P     P A  +  IE  R   +P  G++ E   WP+ R+QAL  L  
Sbjct: 180 --KPPKTGLQPPPAAHFLPDAITQTVIETVRSLELPLYGKL-EPFHWPVTRSQALEALDQ 236

Query: 243 FCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAYRAAQGQI 302
           F  + L  FG +QDAM +     W   HS ++ ALN  LL P EVI  T  A+     Q 
Sbjct: 237 FLTVKLKTFGPYQDAMVSGQATMW---HSLIAPALNLGLLHPLEVIRQTEQAFH--NNQA 291

Query: 303 SLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQTKMRCLQQAI 362
            +A VEGF+RQILGWREY+ G++      Y   N     RPLP +FW GQT + CLQQ  
Sbjct: 292 PIASVEGFIRQILGWREYMYGLHHYFPDTYGQSNWFEHDRPLPEFFWTGQTDLHCLQQCF 351

Query: 363 TQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGIYIDAIEWVELPNTRGMALFAD 422
            Q    GY+HHIQRLM+  NFAL+   DP  V  W+   ++DA +WV   N  GM LFAD
Sbjct: 352 QQIEAIGYSHHIQRLMILANFALIAGLDPWAVKEWFQATHLDAYDWVMETNVLGMGLFAD 411

Query: 423 GGLIATKPYSASGSYINKMSDYCASCAYQVKLKSGEKACPLNSLYWRFMLKHRDRLANNP 482
           GG +A+KPY+AS +YIN+MS+YC +C Y  K + G++ACP N+LYW F+ +H  +L    
Sbjct: 412 GGKLASKPYAASANYINRMSNYCQNCRYDPKQRLGDRACPFNALYWDFLDRHEQKLQAQG 471

Query: 483 RIGMLYKTWDKMTSDSQQAILSTA 506
           R+G++ K   K+    + AI   A
Sbjct: 472 RMGLILKQLQKLPDSDRAAIRDQA 495