Pairwise Alignments

Query, 516 a.a., cryptochrome/photolyase family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  654 bits (1688), Expect = 0.0
 Identities = 320/555 (57%), Positives = 387/555 (69%), Gaps = 41/555 (7%)

Query: 2   RYSVVRLILGDQLNHAHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQCAFFAAMQAFAD 61
           ++  +RL+LGDQL   HSWFS+H D VLYLIAEL QE  YV HH+QK CAFFAAM  FA 
Sbjct: 16  QFHTLRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHVQKVCAFFAAMADFAK 75

Query: 62  YLSAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRLLEQMANLRLSG 121
            L+A GH V HL LD +A++ +LP L+  + Q   A  F+YQRPDEYRLL Q+    + G
Sbjct: 76  SLTASGHRVLHLTLDDTAEFANLPALLCHVLQITGARRFEYQRPDEYRLLLQLGTFAVPG 135

Query: 122 ITIGCVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQWNFDA 181
           + +  VD+EHFLLPF EI   FP  K +LME FYRRMRKRF  LM    +P GGQWNFD 
Sbjct: 136 VQVEMVDSEHFLLPFDEISMLFPKGKHILMESFYRRMRKRFDILMDG-ARPMGGQWNFDG 194

Query: 182 DNRNKLKSPDLLQLPTPLCFDNPVASIKARIERHRIPSIGQVG----------------- 224
            NRNKLK+ D+  LP PL F N ++ I  R++RH I +IG +                  
Sbjct: 195 SNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQATQAITKGCKASYVS 254

Query: 225 ------------------ESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRW 266
                              +LLWPINR Q+L+LLAHFC+ CLP FGRFQDAMTA H   W
Sbjct: 255 GDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFGRFQDAMTANHASAW 314

Query: 267 SLYHSRLSFALNSKLLSPREVIEATISAYRA-----AQGQISLAQVEGFVRQILGWREYV 321
           SLYHSRLSF++NSKLL P EVI+A ISAY A     A G + +AQVEGFVRQILGWREYV
Sbjct: 315 SLYHSRLSFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQVEGFVRQILGWREYV 374

Query: 322 RGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTG 381
           RG+YW+NMP Y   N LGA+  LP YFW+G T+M C++ AI QSLD+ YAHHIQRLM+TG
Sbjct: 375 RGVYWANMPDYGMLNALGAENRLPHYFWSGDTRMNCMRHAIGQSLDYAYAHHIQRLMITG 434

Query: 382 NFALLTECDPDQVDAWYLGIYIDAIEWVELPNTRGMALFADGGLIATKPYSASGSYINKM 441
           NF LLT+ DP QVD WYLGIY+DAIEWVE+PNTRGMALFADGG++ TKPY+ASG+YINKM
Sbjct: 435 NFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVGTKPYAASGAYINKM 494

Query: 442 SDYCASCAYQVKLKSGEKACPLNSLYWRFMLKHRDRLANNPRIGMLYKTWDKMTSDSQQA 501
           SDYC  C Y +K KSG  +CP NSLYWRF+ KH +RL  N R+GM++ +W KM    + A
Sbjct: 495 SDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMIFSSWYKMPESQRTA 554

Query: 502 ILSTADAYLSQIESL 516
           IL+TA+ Y+  +E L
Sbjct: 555 ILATAEQYIVDLERL 569