Pairwise Alignments

Query, 516 a.a., cryptochrome/photolyase family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  682 bits (1760), Expect = 0.0
 Identities = 328/514 (63%), Positives = 390/514 (75%), Gaps = 2/514 (0%)

Query: 3   YSVVRLILGDQLNHAHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQCAFFAAMQAFADY 62
           +  VRLILGDQLN  H+W+ +    VLYLIAELHQE  YV HH+QK CAFF+AM  FA  
Sbjct: 10  FHTVRLILGDQLNAEHTWYQQVDPKVLYLIAELHQENTYVTHHVQKICAFFSAMAQFASE 69

Query: 63  LSAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRLLEQMANLRLSGI 122
           L A GH V +L LD +  + DL  L+     +  A  F+YQRPDEYRLL Q++ L+L+  
Sbjct: 70  LGAAGHQVRYLTLDDTQDFADLNALLQYYVAETGAIKFEYQRPDEYRLLAQLSQLKLANA 129

Query: 123 TIGCVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQWNFDAD 182
            + CVDTEHFL PF EI  +FP  +  LMEHFYRRMRKRF  LMT D KP GGQWNFD +
Sbjct: 130 VVNCVDTEHFLFPFDEIDREFPQGQHRLMEHFYRRMRKRFNILMT-DVKPVGGQWNFDVN 188

Query: 183 NRNKLKSPDLLQLPTPLCFDNPVASIKARIERHRIPSIGQVGESLLWPINRAQALSLLAH 242
           NR KLKS D+  LPTPL F + V  I AR++RH I ++G+    LLWPINRAQ+L LL +
Sbjct: 189 NRQKLKSQDIKSLPTPLMFGHNVQDILARLQRHGINTMGKADTHLLWPINRAQSLELLQY 248

Query: 243 FCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAYRAAQGQI 302
           FC+ CLP FGRFQDAMT QHP +WSLYHSRLSF+LN+KL+SP EVI A I  Y A    I
Sbjct: 249 FCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLEVINAVIEHYHA-NPFI 307

Query: 303 SLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQTKMRCLQQAI 362
            +AQVEGFVRQILGWREYVRG+YW+NMP Y + N L A R LP YFW+G+T+M CL  A+
Sbjct: 308 EIAQVEGFVRQILGWREYVRGIYWANMPKYASINALEATRKLPDYFWHGKTRMNCLHHAL 367

Query: 363 TQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGIYIDAIEWVELPNTRGMALFAD 422
           +QSLDF YAHHIQRLMV GNF LLTE  PD+VD WYLG+Y+DAIEWVE+PNTRGMALFAD
Sbjct: 368 SQSLDFAYAHHIQRLMVIGNFCLLTEIAPDEVDKWYLGVYVDAIEWVEMPNTRGMALFAD 427

Query: 423 GGLIATKPYSASGSYINKMSDYCASCAYQVKLKSGEKACPLNSLYWRFMLKHRDRLANNP 482
           GG++ TKPY+ASGSYINKMSDYC SC Y++K +SGE ACPLNSLYWRFM KHR +L +NP
Sbjct: 428 GGIVGTKPYAASGSYINKMSDYCGSCHYKIKERSGESACPLNSLYWRFMDKHRAQLTHNP 487

Query: 483 RIGMLYKTWDKMTSDSQQAILSTADAYLSQIESL 516
           RI MLY+TWD      +QAIL+TA+ +L+Q+E L
Sbjct: 488 RIAMLYRTWDNTEKSVKQAILATAEQHLAQLERL 521