Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 876 a.a., 3'-to-5' exoribonuclease RNase R from Pseudomonas fluorescens FW300-N2E2

 Score =  174 bits (440), Expect = 2e-47
 Identities = 158/586 (26%), Positives = 258/586 (44%), Gaps = 58/586 (9%)

Query: 24  GTIKASDKGFGFL-EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80
           G I     GFGFL   D     F+ P  M+    GD+ +A +   + R   E    E++ 
Sbjct: 91  GRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDGDRALARVSGLDRRGRREGVIVEVVS 150

Query: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140
           ++    +GR     G   V PD+P++++  L    + G  +     G +V   +   P  
Sbjct: 151 RAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPGRNGAAKV----GQFVEVKITHWPTA 206

Query: 141 G--DDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDWQLKDDADLVRE---- 194
                G  V++         +I    V L   D+P+  P  +    LK+ A L  E    
Sbjct: 207 RFQPQGDIVEVVGNYMAPGMEID---VALRTYDIPHVWPEAV----LKEAAKLKPEVEEK 259

Query: 195 ------DLTALPFVTIDGESTKDMDDALYAQQLP------NGDFALTIAIADPTAYITPE 242
                 DL  LPFVTIDGE  +D DDA+Y +  P      +G + L +AIAD ++Y+   
Sbjct: 260 DKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIADVSSYVKIG 319

Query: 243 DEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDI 302
             +D  A+ RG ++Y P R IPMLP  L++ LCSL     R A+ C +TI K G +  D 
Sbjct: 320 SALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTISKTGEM-TDY 378

Query: 303 RFFAANIKSHARLVYDHVSDWLET-GSSEQWQPSEEIAQVV---RDLYAFSQARANWRET 358
           +F+ A I S ARL Y+ VS  LET  +SE      E A VV   + LY+  +     R  
Sbjct: 379 QFYEAVIHSQARLTYNKVSTILETPKTSEAKALRAEYAGVVPHLKQLYSLYKVLLGARHV 438

Query: 359 HAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVF 418
              +  +  + R    ++  + AI    R  A++L+EE M+ AN+   + L+      ++
Sbjct: 439 RGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALY 498

Query: 419 NTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR-KY 477
             H G   E++  +   +   G      +   T + + AL   +  +   ++   +  + 
Sbjct: 499 RVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYHVIQTVMLRS 558

Query: 478 QSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI---------------- 521
            S +        HF +  + Y  +TSPIR+Y D++ HR +++ I                
Sbjct: 559 LSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNTPHVKRAGAMT 618

Query: 522 LGKAPVQTPDET----VGEELALHRKHHKIAERNVADWLYARTLAD 563
           + KA +   DE     +GE+ ++  +    A R+V +WL    + D
Sbjct: 619 IPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKD 664