Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 877 a.a., RNAse R from Pseudomonas syringae pv. syringae B728a

 Score =  170 bits (430), Expect = 3e-46
 Identities = 152/587 (25%), Positives = 258/587 (43%), Gaps = 60/587 (10%)

Query: 24  GTIKASDKGFGFLEVDSKTS-YFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80
           G I     GFGFL  D  +   F+ P  M+    GD+ +A +   + R   E    E+I 
Sbjct: 91  GRISGHRDGFGFLVPDDGSDDLFMSPAQMRLVFDGDRALARVSGLDRRGRREGVIVEVIS 150

Query: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140
           ++    +GR     G   V PD+P++++  L    +   N A    G +V   +   P  
Sbjct: 151 RAHESIVGRYFEESGIGFVVPDNPKIQQEVLVTPGRN--NGAKI--GQFVEVKITHWPTP 206

Query: 141 GDDGFFVQISHKITDANDKIAPWW---VTLAENDLPNSEPAGIDDWQLKDDADLVRE--- 194
                F      I    + +AP     V L   D+P+  P  +    LK+ A L  E   
Sbjct: 207 R----FQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHVWPEAV----LKEAAKLKPEVEE 258

Query: 195 -------DLTALPFVTIDGESTKDMDDALYAQQLP------NGDFALTIAIADPTAYITP 241
                  DL  LPFVTIDGE  +D DDA+Y +  P      +G + L +AIAD ++Y+  
Sbjct: 259 KDKEHRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLYVAIADVSSYVKI 318

Query: 242 EDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDD 301
              +D  ++ RG ++Y P R +PMLP  L++ LCSL  +  R A+ C +TI K G + D 
Sbjct: 319 GSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDRLAMVCEMTISKTGEMTDY 378

Query: 302 IRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSE----EIAQVVRDLYAFSQARANWRE 357
           + F+   I SHARL Y+ VS  LE   + + +       ++   ++ LYA  +     R 
Sbjct: 379 V-FYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVPHLKQLYAMYKVLLGARH 437

Query: 358 THAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGV 417
               +  +  + R    ++  +  I    R  A++L+EE M+ AN+   + L+      +
Sbjct: 438 VRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLAANVATAQFLKKHEIPAL 497

Query: 418 FNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR-K 476
           +  H G   E++  +   +   G      +   T + + AL   +  +   +L   +  +
Sbjct: 498 YRVHDGPPPERLEKLRAFLGELGLTLHKGKEGPTPKDYQALLETVRDRPDYHLIQTVMLR 557

Query: 477 YQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI--------------- 521
             S +   +    HF +  + Y  +TSPIR+Y D++ HR +++ I               
Sbjct: 558 SLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIRSKQDTPHVRRAGAA 617

Query: 522 -LGKAPVQTPDET----VGEELALHRKHHKIAERNVADWLYARTLAD 563
            + KA +   D+     +GE+ ++  +    A R+V +WL    + D
Sbjct: 618 TIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWLKCEYMKD 664