Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., putative ribonuclease II from Synechococcus elongatus PCC 7942

 Score = 52.4 bits (124), Expect = 5e-11
 Identities = 78/333 (23%), Positives = 138/333 (41%), Gaps = 47/333 (14%)

Query: 202 VTIDGESTKDMDDALYAQQL-PNGD-FALTIAIADPTAYITPEDEMDKVARERGFTIYLP 259
           +TIDG S+ D+DD ++A+ +   GD   LTIAIA     +      + VA  R  ++Y  
Sbjct: 5   LTIDGPSSLDLDDGVWAEPVDEQGDRICLTIAIAGVATALPHLGIEECVALARLQSVYQG 64

Query: 260 GRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVYDH 319
            + +  +      E  SL+    RP +C    I + G +     F+   ++S A+L Y+ 
Sbjct: 65  TQMVRAMLSPERTEALSLLPGGPRPVVCLQALISRRGEVLFS-EFWETEVESVAKLSYEQ 123

Query: 320 VSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADNDV 379
           V+  L        +   E+ +V+R L A +  R +           + ++R +L      
Sbjct: 124 VNGVL------AGKEDHELREVLRWL-AIAAGRLDKNRRGLWGRSRQGEFRDDLG----- 171

Query: 380 VAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVN 439
               + +   A +L+  + I  N  AG+ L+ +    +F      + E +A + E    N
Sbjct: 172 ----SVITGKAEQLIASTAIFYNQMAGEKLKQSGFPALFRVQDPRQDEAIAPLFEEHGGN 227

Query: 440 GAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYA 499
                                   T     + + + + Q   + G     H+A+ L  YA
Sbjct: 228 -----------------------PTVLAPLISHCLPRAQHRVKAG----LHWALQLPAYA 260

Query: 500 TWTSPIRKYGDMINHRLLKAHILGKAPVQTPDE 532
             +SP+R+Y D++N R L A IL ++P   P E
Sbjct: 261 RSSSPLRRYEDLVNQRQLLA-ILRESPSFYPPE 292