Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

 Score =  190 bits (483), Expect = 2e-52
 Identities = 175/671 (26%), Positives = 292/671 (43%), Gaps = 68/671 (10%)

Query: 15  IQETLPKKEGTIKASDKGFGFLEVDSK-TSYFVPPPYMKKCMHGDKVVAFIRTENER--E 71
           + E +    GT+     GFGF   D+     F+    M+   HGDKV+A     + R   
Sbjct: 78  LPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFHGDKVLAQKAGVDRRGRR 137

Query: 72  VAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVV 131
            A    L+ +     +GR  +  G   V  D  ++    L A   K       + GD VV
Sbjct: 138 DARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIANEDKN----GARHGDVVV 193

Query: 132 AHLVRHPLKGDDGFFVQISHKITDANDK-IAPWW---VTLAENDLPNSEPAGID------ 181
             L R P     G +V+   K+T+   K +AP     + L   DLP+   A I+      
Sbjct: 194 IELTRRP-----GRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAVIEKKLRRI 248

Query: 182 -DWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240
            D+   +D +  R DL  LP VTIDGE  +D DDA+YA++   G + L +AIAD + Y+ 
Sbjct: 249 PDYVTDEDKE-GRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIADVSHYVR 307

Query: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300
            +  +DK AR RG ++Y P + IPMLP  L++ LCSL     R  +   +TI   G +  
Sbjct: 308 TDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTISAKGGL-S 366

Query: 301 DIRFFAANIKSHARLVYDHVSDWLETGS-SEQWQPSEEIAQVVRDLY-AFSQARANWRET 358
             +F+ A + SHAR  Y  V+  LE G   ++ +      +V+++LY    + RA   E 
Sbjct: 367 GYKFYPAVMHSHARFTYTQVAAMLEGGEVKDEHKALFPHLKVLQELYLCLDEQRA---ER 423

Query: 359 HAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVF 418
            A+ F +  + +F  +    +  I    R  A++++EE MI AN+ A K +    G  ++
Sbjct: 424 GAIAF-ETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHVLY 482

Query: 419 NTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQ 478
             H     +K+    + +A  G            +  A + +     +   +   + +  
Sbjct: 483 RVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLLRSM 542

Query: 479 SYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPD------- 531
             +        HF + L+ Y+ +TSPIR+Y D++ HR+++ ++L K   +  +       
Sbjct: 543 RQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIR-YLLAKERGEASEKWTADGG 601

Query: 532 --------ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGM 583
                   + +GEE +   +    A R+V+DWL    + D       F   I  +   G+
Sbjct: 602 YHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDS--FSGVIASVTSFGL 659

Query: 584 RVRLLENGAMAFIPGALILDNKERIECNGED---------GTVLIDKEVVYKLGDVLEIV 634
            VRL E          L +D    I   G D           +  +   +Y++GD + + 
Sbjct: 660 FVRLDE----------LFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVK 709

Query: 635 LTEVNQENRSL 645
           +  VN ++R +
Sbjct: 710 VASVNLDDRQI 720