Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 842 a.a., ribonuclease R (NCBI) from Rhodospirillum rubrum S1H

 Score =  157 bits (397), Expect = 2e-42
 Identities = 141/499 (28%), Positives = 226/499 (45%), Gaps = 29/499 (5%)

Query: 165 VTLAENDLP-NSEPAGIDDWQLKDDADLV-REDLTALPFVTIDGESTKDMDDALYAQQLP 222
           V +  +D+P +  P  + + +     DL  REDL A+P VTIDGE  +D DDA++A+   
Sbjct: 276 VVVHSHDIPVDFPPEALAEAEAAVGVDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDD 335

Query: 223 N----GDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLM 278
           +    G +   +AIAD   Y+     +DK ARERG ++Y P R +PMLP  L++  CSL 
Sbjct: 336 DPANPGGWRALVAIADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLR 395

Query: 279 ENQVRPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEI 338
            N+ R  L   +    +G      RF    ++S ARL Y  V    +  + +   P +E 
Sbjct: 396 PNEDRGCLAVWMIFDAEGNKLRH-RFLRGLMRSAARLTYTQVQAARDGHADDLTAPLQE- 453

Query: 339 AQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESM 398
            +V+  LY   QA    R     +  D P+ +  L    +V  I   +R  +++L+EE M
Sbjct: 454 -RVIAPLYGVFQALLGARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELM 512

Query: 399 ITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAAL 458
           I AN+ A +TL+      ++  H     +K+  + E +     P        + +    L
Sbjct: 513 IAANVSAAETLEEKRRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVL 572

Query: 459 RRWLATQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLK 518
           +    T     ++  + + Q+ +E     + HF + L  YA +TSPIR+Y D++ HR L 
Sbjct: 573 KAARGTPHEHMVNEVVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRALI 632

Query: 519 AHI-LGKAPVQTPDETVGEELALH----RKHHKIAERNVADWLYARTLADEPAKETRFQA 573
           A + LG   ++   E    E A H     +    AER+  +      LA +      F  
Sbjct: 633 AGLGLGDDGLRPGAEEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVG--ATFAG 690

Query: 574 EIFDINRPGMRVRLLENGAMAFIP-GAL-----ILDNKERIECNGEDGTVLIDKEVVYKL 627
            I  + R G+ V L + GA   IP G+L     + D+         DG       + + L
Sbjct: 691 RINGVTRAGLFVTLEDTGADGLIPIGSLPNDYYVHDDAHHCLRGQRDG-------LEFHL 743

Query: 628 GDVLEIVLTEVNQENRSLV 646
           G  +E++L E N  +  LV
Sbjct: 744 GAPVEVLLREANPVSGGLV 762