Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., putative ribonuclease R from Phaeobacter inhibens DSM 17395

 Score =  170 bits (430), Expect = 3e-46
 Identities = 140/457 (30%), Positives = 215/457 (47%), Gaps = 21/457 (4%)

Query: 193 REDLTALPFVTIDGESTKDMDDALYAQQLPN----GDFALTIAIADPTAYITPEDEMDKV 248
           REDL  LP +TID    +D DDA YA    +    G   + +AIAD  AY+ P   +D+ 
Sbjct: 249 REDLRDLPLITIDPADARDHDDACYAHADDDPKNPGGHVIWVAIADVAAYVQPGSALDRA 308

Query: 249 ARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDI--RFFA 306
           AR+RG + Y P R +PMLP  L+ +LCSL E    P  C +V ++ D   G+ I  RF  
Sbjct: 309 ARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGV--PRACVAVRMQID-ADGNKIAHRFVR 365

Query: 307 ANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDR 366
             ++S A L Y  V + ++   +++  P  E   V++ LYA   A    R     +  D 
Sbjct: 366 GLMRSAASLHYAEVQEAMDGAPTDRTGPFLE--PVIKPLYAAYAALVKARAERQPLDLDL 423

Query: 367 PDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKA 426
           P+ +  L     V +++   R  A++L+EE M+ AN+ A +TL       +F  H     
Sbjct: 424 PERKIVLDEKGTVASVNFRDRLDAHKLIEEFMVLANVAAAETLIKKRTPLLFRVHEEPSP 483

Query: 427 EKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGNQ 486
           EK+  + E     G   A  + L T    A L     T +   ++    +    +  G +
Sbjct: 484 EKLEALRETARAAGLALAKGQVLQTRHLNALLHGAAGTDDAELINISTLRSMQQAYYGPE 543

Query: 487 PLPHFAMGLDVYATWTSPIRKYGDMINHR-LLKAHILGKAPVQTPDETVGEELALH---- 541
              HF + L  YA +TSPIR+Y D+I HR L+ AH  G   + T +    E+ A H    
Sbjct: 544 NFGHFGLALRNYAHFTSPIRRYADLIVHRALITAHGWGDDGLDTAEIERLEQTATHISET 603

Query: 542 RKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGALI 601
            +   +AER+  D   A  LA+    E  F+  I  I R G  V+L E GA   +P   I
Sbjct: 604 ERRSMMAERDTTDRYLAAYLAERVGNE--FEGRISGIARFGAFVKLDETGADGLVPVRSI 661

Query: 602 LDNKERIECNGEDGTVL-IDKEVVYKLGDVLEIVLTE 637
              +E    + E GT++  D  ++  +G  +++ L +
Sbjct: 662 --GREFFHFDAEAGTLMGADTGLIIAIGQRVKVRLAQ 696