Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 824 a.a., ribonuclease R (RefSeq) from Shewanella loihica PV-4

 Score =  208 bits (529), Expect = 9e-58
 Identities = 186/676 (27%), Positives = 316/676 (46%), Gaps = 78/676 (11%)

Query: 15  IQETLPKKEGTIKASDKGFGFLEVDSK-TSYFVPPPYMKKCMHGDKVVAF---IRTENER 70
           + E +    GT+     GFGFL++D      F+    M    HGDKV+A    +  +  R
Sbjct: 78  LPERMDLLSGTVLGHKDGFGFLKLDEGGDDLFINNRDMLMYFHGDKVLAQKAGVDRKGRR 137

Query: 71  EVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQL-KKLSLKAKTKKGLNEADFQEGDW 129
           E A    L  +     +GR  L  G   V  D  ++ +++ +    + G      ++GD 
Sbjct: 138 E-ARIVRLTHERTAPLVGRFHLDSGMAFVITDDKRITQEILIPDDDRNGA-----RQGDV 191

Query: 130 VVAHLVRHPLKGDDGFFVQISHKITDANDK-IAPWW---VTLAENDLPNSEPAGIDDW-- 183
           VV  L R P     G +++ + K+T+   K +AP     + L   DLP++  + I+    
Sbjct: 192 VVIELTRRP-----GRYMKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSSLIEKKLR 246

Query: 184 ----QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYI 239
               ++ ++  L R DL  LP VTIDGE  +D DDA+YA+   +G + L +AIAD + Y+
Sbjct: 247 KIPDEVTEEDKLGRVDLRKLPLVTIDGEDARDFDDAVYAETKKSGGWRLWVAIADVSHYV 306

Query: 240 TPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIG 299
             E  +DK AR RG ++Y P + IPMLP  L++ LCSL     R  +   +TI   G + 
Sbjct: 307 RTESALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTISAAGKL- 365

Query: 300 DDIRFFAANIKSHARLVYDHVSDWLETGS-SEQWQPSEEIAQVVRDLY-AFSQARANWRE 357
              +F+ A + SHARL Y  V++ LE G  S++ +P     Q ++ LY      RA   +
Sbjct: 366 SGYKFYPAVMHSHARLTYTQVAEMLEGGEVSDELKPLFPHLQTLQSLYLTLDDTRA---Q 422

Query: 358 THAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGV 417
             A+ F +  + +F  +AD  +  I    R  A++++EE MI AN+ A K ++   G  +
Sbjct: 423 RGAIAF-ETTETQFIFNADRKIERIEPRTRNQAHKIIEECMILANVAAAKFVKKHKGEVL 481

Query: 418 FNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKY 477
           +  H     +K+ +  + +   G            +  A + + +   +   +   + + 
Sbjct: 482 YRVHEAPSEQKLTNFKDFLKERGLSMGGGLEPEPADYQALMEQVVDRPDAELIQVMLLRS 541

Query: 478 QSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGK-----APVQTPD- 531
              +        HF + L+ Y+ +TSPIR+Y D+I HR+++ ++L K     +   TPD 
Sbjct: 542 MRQATYTPDNEGHFGLALEEYSHFTSPIRRYPDLILHRVIR-YLLAKERGEASDKWTPDG 600

Query: 532 ---------ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPG 582
                    + +GEE +   +    A R+V+DWL    + D       F+A I  +   G
Sbjct: 601 GYHYQIEELDLLGEECSNTERRADEATRDVSDWLKCEFMRDHVG--DTFEAVIASVTHFG 658

Query: 583 MRVRLLENGAMAFIPGALIL----------DN-KERI--ECNGEDGTVLIDKEVVYKLGD 629
           M VRL +     FI G + +          DN ++R+  E +G+          VY++GD
Sbjct: 659 MFVRLSD----LFIDGLVHISTLGGDYYHYDNMRQRLVGEASGQ----------VYQIGD 704

Query: 630 VLEIVLTEVNQENRSL 645
            + + +  VN ++R +
Sbjct: 705 PVTVKVAAVNLDDRQI 720