Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 828 a.a., ribonuclease R from Dechlorosoma suillum PS

 Score =  208 bits (529), Expect = 9e-58
 Identities = 173/611 (28%), Positives = 286/611 (46%), Gaps = 36/611 (5%)

Query: 1   MFQDNPLLAQLKQKIQETLPKKE----GTIKASDKGFGFLEVDSKTS-YFVPPPYMKKCM 55
           M +D  LL   K      LP+K     G ++    GFGF++ D  +   F+ P  M K +
Sbjct: 70  MERDGQLLRNRKNSY--ILPEKADLIPGKVEGHPDGFGFVKPDDGSDDLFLEPKQMDKVL 127

Query: 56  HGDKVVAFIRTENEREVAEPS--ELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKA 113
           HGD+V+      + R   E +  E++E++ TR +GR+    G   V  ++ ++ +  L  
Sbjct: 128 HGDRVLVRCIGLDRRGRREATIVEVLERANTRLVGRLMEEHGIQFVVAENKRISQDILIP 187

Query: 114 KTKKGLNEADFQE--GDWVVAHLVRHPLKGDD--GFFVQISHKITDANDKIAPWWVTLAE 169
            T      A  +   G+ V+  ++  P +     G  V+I     D   +I    + L +
Sbjct: 188 PTAMTDKRAKLKARPGNVVMVEILEQPSRYSQPIGRIVEILGNYADPGMEIE---IALRK 244

Query: 170 NDLP-------NSEPAGIDDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLP 222
           +DLP        +E   + D   K D    REDL  LP VTIDGE+ +D DDA++ +++ 
Sbjct: 245 HDLPFEFSKEAQAENKAVPDKVKKSDFK-GREDLRELPLVTIDGETARDFDDAVFCEKVG 303

Query: 223 NGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQV 282
            G + L +AIAD + Y+ P   +D+ A +RG ++Y P R IPMLP  L++ +CSL  +  
Sbjct: 304 RG-WRLVVAIADVSHYVRPGMALDQEAYDRGNSVYFPRRVIPMLPEKLSNGICSLNPDVE 362

Query: 283 RPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVV 342
           R A+ C + I   G IG   RF+ A  +SHARL Y+ V  WL    S Q QP  E+ Q +
Sbjct: 363 RLAMVCDMNISATGSIGK-YRFYPAVFRSHARLTYNQVWGWL----SGQSQPENEVHQAL 417

Query: 343 R----DLYAFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESM 398
           +    +LY   Q     R+    +  +  + +   +A   +  I   +R  A+RL+EE M
Sbjct: 418 QPHLQNLYKLFQVLLKARKKRGAIDFETVETQMLFNAQGKIENIVPVVRNDAHRLIEECM 477

Query: 399 ITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAAL 458
           + AN+CA   L       ++  H G   EK+ ++   +   G   A  +     +    L
Sbjct: 478 LAANVCASGFLHEHKQACLYRVHQGPTPEKLENLRAFLGEFGFSLAGGDEPKAKDYAELL 537

Query: 459 RRWLATQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLK 518
            +     +T  L   + +    ++   + L HF +  + Y  +TSPIR+Y D++ HR +K
Sbjct: 538 EKIQGRPDTQLLQTVMLRSLRQAQYAPENLGHFGLAYEAYTHFTSPIRRYPDLLVHRAIK 597

Query: 519 AHILGKAPVQTPDETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDI 578
           A + G+       E +G   +   +    A R+V +WL    + +   +E  F+  I  +
Sbjct: 598 AVLAGETYNPGKWEDIGLHCSGTERRADEATRDVDNWLKCFYMKERIGEE--FEGTIAGV 655

Query: 579 NRPGMRVRLLE 589
              G+ V L E
Sbjct: 656 AAFGIFVALDE 666