Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 813 a.a., exoribonuclease R from Marinobacter adhaerens HP15

 Score =  179 bits (455), Expect = 4e-49
 Identities = 151/580 (26%), Positives = 257/580 (44%), Gaps = 44/580 (7%)

Query: 24  GTIKASDKGFGFLEVDSKTS-YFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80
           G +     GFGFL  D   S  F+    M++  HGD+V A +   ++R   E    E++E
Sbjct: 48  GRVIGHKDGFGFLVPDDGGSDLFLTARQMRQVFHGDRVAARVDRVDDRGRREGVIVEVLE 107

Query: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140
              ++ +GR     G   V P++ ++    L  +   G    + + G +VV  +VR P  
Sbjct: 108 YRTSQTVGRFFQESGISFVVPENARINHEVLIPQENCG----NARHGQYVVVDIVRQPTV 163

Query: 141 GDDGFFVQISHKITDANDKIAPWW---VTLAENDLPNSEPAGIDDW------QLKDDADL 191
                   +   +    + +AP     V +   D+P+S P  + +       ++ +   +
Sbjct: 164 RTQ----PLGKVVEVLGEHMAPGMEIDVAIRSYDIPHSWPPAVGEQTAAIPEEVTEKDKV 219

Query: 192 VREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARE 251
            R+D+  L  VTID E+ +D DDA+Y +    G + L +AIAD + Y+ P   +D+ A  
Sbjct: 220 NRKDIRNLRLVTIDDETARDFDDAVYCEPRARGGYRLLVAIADVSHYVRPGTPLDEEAVN 279

Query: 252 RGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAANIKS 311
           R  ++Y P   +PMLP  L++ LCSL     R  +   +TI   G I     F+ A + S
Sbjct: 280 RSTSVYFPDHVVPMLPEKLSNGLCSLNPGVDRLCMVADMTISAAGNI-SSYSFYQAVMFS 338

Query: 312 HARLVYDHVSDWLETGSSEQ-WQPSEEIAQV---VRDLYAFSQARANWRETHAVVFPDRP 367
           HARL Y+ VS  LE   +EQ ++  E+ A V   + +LY   Q     R     +  +  
Sbjct: 339 HARLTYNKVSTMLEHPDTEQGYKLCEQYANVLPQLHNLYGLYQLLRKARTERGAIDFETT 398

Query: 368 DYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAE 427
           + +    AD  +  I    R  A++++EE M+ AN+   + L+      ++  H G   E
Sbjct: 399 ETKIVFDADRKIEEIVPVQRNDAHKIIEECMLCANVATARFLKKHKLPALYRVHDGPSEE 458

Query: 428 KMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGNQP 487
           ++  V   +   G      ++  + +    L       + + +   + +  S +    + 
Sbjct: 459 RLNAVRLFLGELGLQLGGGDSPTSADYQELLNSIKDRSDANVIQTVMLRSLSQAVYSPEE 518

Query: 488 LPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQ------TPD---------- 531
             HF +G   YA +TSPIR+Y D+INHR +K+ I G  P +       PD          
Sbjct: 519 GGHFGLGYAGYAHFTSPIRRYPDLINHRAIKSVIHGGQPSKDVVPPPKPDPELAEYPYDM 578

Query: 532 ---ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKE 568
              E +GE  ++  +    A R+V  WL    L+D   +E
Sbjct: 579 ARMEQLGEHTSMAERRADDATRDVMAWLKCEYLSDHVGEE 618