Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  198 bits (503), Expect = 9e-55
 Identities = 182/671 (27%), Positives = 307/671 (45%), Gaps = 72/671 (10%)

Query: 19  LPKK----EGTIKASDKGFGFLEVDSK-TSYFVPPPYMKKCMHGDKVVA--FIRTENERE 71
           LP+K     GT+    +G+GF + D      F+    M    HGDKV+A         R 
Sbjct: 78  LPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDKVLAQKVGMDRKGRR 137

Query: 72  VAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQL-KKLSLKAKTKKGLNEADFQEGDWV 130
            A    LI+      +GR  +  G   V  D  ++ +++ + ++ + G      ++GD V
Sbjct: 138 EARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASEDRNGA-----RQGDVV 192

Query: 131 VAHLVRHPLKGDDGFFVQISHKITDANDK-IAPWW---VTLAENDLPNSEPAGIDDW--- 183
           V  L R P     G FV+ + K+T+   K +AP     + L   DLP++  A I+     
Sbjct: 193 VVELTRRP-----GRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEKKLRR 247

Query: 184 ---QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240
              ++ +   + R DL +LP VTIDGE  +D DDA+YA+  P+G + L +AIAD + Y+ 
Sbjct: 248 IPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADVSYYVR 307

Query: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300
            +  +D  AR RG ++Y P + IPMLP  +++ LCSL  +  R  +   +TI   G +  
Sbjct: 308 TDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKL-S 366

Query: 301 DIRFFAANIKSHARLVYDHVSDWLETGS-SEQWQPSEEIAQVVRDLY-AFSQARANWRET 358
             +F+ A + SHAR  Y  V+  LE G  + + +      Q ++ LY A  + RA   E 
Sbjct: 367 GYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFVHLQCLQSLYLALDEQRA---ER 423

Query: 359 HAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVF 418
            A+ F +  + +F  +    +  I    R  A++++EE MI AN+ A K ++   G  ++
Sbjct: 424 GAIAF-ETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEILY 482

Query: 419 NTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQ 478
             H     +K+A+  E +A  G            +    + +     +   +   + +  
Sbjct: 483 RVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLRSM 542

Query: 479 SYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQ-----TPD-- 531
             +        HF + L+ YA +TSPIR+Y D++ HR+++ ++L K   +     TPD  
Sbjct: 543 RQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIR-YLLAKEKGEANEKWTPDGG 601

Query: 532 --------ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGM 583
                   + +GEE +   +    A R+V+DWL    + D       F+A I  +   G+
Sbjct: 602 YHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVG--DTFEAVIASVTNFGL 659

Query: 584 RVRLLENGAMAFIPGALILDNKERIECNGED-------GTVLIDKEV--VYKLGDVLEIV 634
            VRL +          L +D    I   G D          LI +    VY++GD + + 
Sbjct: 660 FVRLND----------LFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVK 709

Query: 635 LTEVNQENRSL 645
           +  VN ++R +
Sbjct: 710 VAAVNLDDRQI 720