Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 815 a.a., exoribonuclease R from Klebsiella michiganensis M5al

 Score =  178 bits (451), Expect = 1e-48
 Identities = 172/675 (25%), Positives = 293/675 (43%), Gaps = 46/675 (6%)

Query: 1   MFQDNPLLAQLKQ--KIQETLPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHG 57
           M +D  L+   +Q   + E L   +G +     G+GFL V+  K   ++    MK C+HG
Sbjct: 62  MERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121

Query: 58  DKVVA--FIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLK-KLSLKAK 114
           D+V+A         R  A    ++     + +GR     G   V PD  +L   + +  +
Sbjct: 122 DQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPPE 181

Query: 115 TKKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPN 174
              G      + G  VV  L + P +       +I   + D         + L  +++P 
Sbjct: 182 QIMGA-----RMGFVVVVELTQRPTRRTKAIG-KIVEVLGDNMGTGMAVDMALRTHEIPY 235

Query: 175 SEPAGIDDW------QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFAL 228
             P  ++        Q+ ++A   R DL +LP VTIDGE  +D DDA+Y ++   G + L
Sbjct: 236 VWPPAVEKQVAGLKEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295

Query: 229 TIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCC 288
            +AIAD + Y+ P   +D  AR RG ++Y P + +PMLP  L++ LCSL     R  + C
Sbjct: 296 WVAIADVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 355

Query: 289 SVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAF 348
            +TI   G +    +F+ A + SHARL Y  V   L+ G  +  +    + + + +L+  
Sbjct: 356 EMTISAKGRL-TGFKFYEAVMSSHARLTYTKVWHMLQ-GDQDLREQYAPLVKHIEELHNL 413

Query: 349 SQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKT 408
            +     RE    +  +  + +F  +A+  +  I    R  A++L+EE MI ANI A + 
Sbjct: 414 YKVLDGAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARF 473

Query: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQ-ET 467
           ++      +F  H     E +     ++A  G              +A L   +A + + 
Sbjct: 474 VEKAEEPALFRIHDKPSTEAITAFRSVLAELGL-ELPGGNKPEPRDYAELLTSIADRPDA 532

Query: 468 SYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPV 527
             L   + +    +    +   HF + L  YA +TSPIR+Y D+  HR +K ++L K   
Sbjct: 533 EMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIK-YLLAKEQG 591

Query: 528 QTPDET--------------VGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQA 573
              + T              +G   ++  +    A R+V+DWL    + D+      F+ 
Sbjct: 592 HKGNSTETGGWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNV--FKG 649

Query: 574 EIFDINRPGMRVRLLENGAMAFIPGALILDNKERIECNGED-GTVLIDKE--VVYKLGDV 630
            I  +   G  VRL E     FI G + + + +      +  G  LI +     Y+LGD 
Sbjct: 650 VIASVTGFGFFVRLDE----LFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDR 705

Query: 631 LEIVLTEVNQENRSL 645
           +E+ +  VN + R +
Sbjct: 706 VEVRVEAVNMDERKI 720