Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 886 a.a., ribonuclease R (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  149 bits (376), Expect = 6e-40
 Identities = 175/663 (26%), Positives = 275/663 (41%), Gaps = 73/663 (11%)

Query: 24  GTIKASDKGFGFL--EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELI 79
           GT++    G GF+  E   +T  +V P  M +  HGDKVV  +         E     ++
Sbjct: 81  GTLQVQRTGMGFVLPEDRRRTDIYVHPTQMGEAWHGDKVVVVLLPGGRGRNPEGRIVRIL 140

Query: 80  EQSLTRFIGRVKLFKGKLNV---APD-----HPQLKKLSLKAKTKKG----LNEADFQEG 127
           E+ L     RV    G+  +   A D     H  +    L+ K +K     ++  +  E 
Sbjct: 141 ERGLKEMPARVVKRMGRQGLLCRAADARIKVHFLVDVTGLEGKPQKDDILVVSPGERVED 200

Query: 128 DWVVAHLVRHPLKGDDGFFVQISHKITDANDKIA---PWWVTLAENDLPNSEPAGIDDWQ 184
               A  VRH    DD   V +  ++   N  +    P  V      LP +   G     
Sbjct: 201 GLWAATAVRHLGSEDD---VSVQERLVKINHGVPTEFPVPVLEEAATLPPAPGGG----- 252

Query: 185 LKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDE 244
             D AD  R DL  + FVTIDG   +D DDA+  ++   G + L +AIAD + Y+ P   
Sbjct: 253 --DFAD--RIDLRHMEFVTIDGARARDFDDAICVEEQGKG-WRLWVAIADVSHYVRPGSA 307

Query: 245 MDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRF 304
           MD+ A ER  + Y P    PMLP  L++ LCSL     R A+   +    +G  G   +F
Sbjct: 308 MDREALERSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAEIYFFGEGSPG-KCKF 366

Query: 305 FAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFP 364
           + A I+S ARL Y  V+  L  G  E+      +  ++      ++     R     +  
Sbjct: 367 YPAVIESKARLTYGQVNRALLLGDEEERLVLRPVLPMLEQAEKLARVLHQRRRERGSLDF 426

Query: 365 DRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGF 424
           D P+     +   + V I   +R   +++VEE MI AN    + L       ++  H   
Sbjct: 427 DLPEPEIAFNIYGETVDIRRKVRHFGHQIVEEFMIAANEAVARFLTEKEADFLYRVHPEP 486

Query: 425 KAEKMADVVELMA----VNGAP-NADAETLATVEGFAALRRWLATQETSYLDNRIRKYQS 479
           + EK++ + +++A      G P  A A  L TV     L++   + +   +     +   
Sbjct: 487 EPEKLSALFKVLAGTDIAQGLPREASAGALQTV-----LQKAHGSAQEFLISRLTLRTMM 541

Query: 480 YSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPD----ETVG 535
            +    +   HF +    Y  +TSPIR+Y D++ HR LK   LG  P  TP       + 
Sbjct: 542 QARYSPEHEGHFGLASACYCHFTSPIRRYADLVVHRALK-RALGGDPGPTPAGGKLVAIA 600

Query: 536 EELALHRKHHKIAERNVADWLYARTLADEPAK----------ETRFQAEIFDINRPGM-R 584
           ++L+ H +    AER +   L    L     +          +  F  E+ ++   GM R
Sbjct: 601 DQLSQHERKAMEAEREILKRLTVLLLRSRVGETLTGVISSILDFGFFVELNEVLADGMVR 660

Query: 585 VRLLENGAMAFIPGALILDNKERIECNGE--DGTVLIDKEVVYKLGDV----LEIVLTEV 638
           +  L++   AFIP        ER E  GE    T  + ++V  +L DV    LE+ L  V
Sbjct: 661 LSSLDDDYYAFIP--------ERQELRGERTGRTFRLGQQVKVRLADVNVGRLEVNLELV 712

Query: 639 NQE 641
            +E
Sbjct: 713 REE 715