Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., ATP-dependent 23S rRNA helicase DbpA from Pseudomonas fluorescens FW300-N2E2

 Score =  283 bits (725), Expect = 9e-81
 Identities = 154/369 (41%), Positives = 233/369 (63%), Gaps = 1/369 (0%)

Query: 25  AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84
           A  F+ L L++A+L+ L  +G+   TPIQA ++PV+L+G D + +A+TG+GKTAAF + L
Sbjct: 5   ATAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64

Query: 85  LNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144
           LN +N   +  QA+VM PTRELA QVA EI+ L +    +KVL + GG S   Q+ +L+ 
Sbjct: 65  LNPINPRFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEH 124

Query: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204
           GAHI+VGTPGR++  + +  L LD  +T ILDEAD ML MGF D +  I++Q PE  Q +
Sbjct: 125 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTL 184

Query: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEE 264
           LFSAT P  +K++  +F+RNP+ V  A +  + A++EQ+++ +   E+ +A+ ++L    
Sbjct: 185 LFSATYPVGIKQLSSKFMRNPQQVK-AEAFHSDAQIEQRFYEIAPEERMDAVVKVLAHFR 243

Query: 265 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324
             + + F  T+Q  +   D L ++G  A  LHGD+ Q  R++ +         +LVATDV
Sbjct: 244 PASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDV 303

Query: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
            ARGLD+  +  V N ++  D E +IHR+GRTGRAG KG AI LV  ++    + IE++ 
Sbjct: 304 AARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQ 363

Query: 385 RSSMEEIQL 393
           +S +   QL
Sbjct: 364 KSPLSWDQL 372



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMS-------ND 556
           T  +  GR   V+  DI+GAL  E G+    +G I +     +V + + ++       ND
Sbjct: 389 TLCIGAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAYVAVERGIAKQALQRLND 448

Query: 557 VSSKLRKLRIR 567
              K R LR+R
Sbjct: 449 GKIKGRSLRVR 459