Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  276 bits (705), Expect = 3e-78
 Identities = 146/385 (37%), Positives = 228/385 (59%), Gaps = 11/385 (2%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F+ L L+ A++ A+   G+  PTP+Q  AIP +L+GRD +  AQTGTGKT  F+LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 86  NKLNLSQY----------KPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
            +L  + +          +P+ +V+ PTRELA QV    K   +++K +    I+GG  +
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSAC-IFGGVGM 119

Query: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
             Q++A+  G  ++V  PGR+ DL  +  + L      +LDEAD ML MGFV DV  ++ 
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179

Query: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEA 255
           + P   Q +LFSAT    + ++  + L NPE ++V   N TV ++EQ+ + +    K   
Sbjct: 180 RLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSL 239

Query: 256 MARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
           +A L+     +  +VF RT+    RLA++L   G  A A+HG+  Q+ R + +   K G 
Sbjct: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGE 299

Query: 316 IDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIR 375
           + ILVATD+ ARGLD+ ++ HV N+++P   E Y+HRIGRTGRAGR G+AI LV  ++ +
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 376 MLRTIERVTRSSMEEIQLPHRDKVA 400
           +L++IER+T+  + +  L   D  A
Sbjct: 360 LLKSIERMTKQKIADGDLMGFDSSA 384