Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  280 bits (717), Expect = 8e-80
 Identities = 146/361 (40%), Positives = 230/361 (63%), Gaps = 1/361 (0%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           FS L L++A+L+ L  +G+ + TPIQA ++PV+L+G D + +A+TG+GKTAAF + LL  
Sbjct: 6   FSSLPLSAAMLANLDALGYAAMTPIQAQSLPVMLKGHDLIAQAKTGSGKTAAFGIALLEP 65

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           LN   +  QA+V+ PTRELA QVA E++ L +    +K+L + GG SI  Q+ +L+ GAH
Sbjct: 66  LNPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAH 125

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           ++VGTPGRV++ + +  L LD  +T +LDEAD ML MGF D +  I+ Q P   Q +LFS
Sbjct: 126 VIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPARRQTLLFS 185

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           AT P  +K++   F+R+P+ V     +   A++EQ+++ +   ++ EA+ RLL +   ++
Sbjct: 186 ATYPAGIKQLSASFMRDPQQVRAEALHDD-AQIEQRFYEIDPEQRMEAVTRLLASFRPES 244

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
            + F  T+Q  + L D L A G  A AL+GD+ Q  R++ +       + +LVATDV AR
Sbjct: 245 CVAFCFTKQQCQELVDHLSANGISAMALNGDLEQRDRDQVLAMFANRSLSVLVATDVAAR 304

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
           GLD+  +  V N ++  D E ++HR+GRTGRAG +G A+ LV   +    + IE++ ++ 
Sbjct: 305 GLDIDALDMVINVELARDAEIHVHRVGRTGRAGNQGLAVSLVAPAEAHRAQAIEKLQQAP 364

Query: 388 M 388
           +
Sbjct: 365 L 365



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T  +  GR   ++  DI+GAL  + G+    +G I +     FV + + +      +L +
Sbjct: 387 TLCIGAGRKDKLRPGDILGALTGDAGIPGTQVGKIAIFDFQAFVAVERGVVKQALKRLNE 446

Query: 564 LRIRQKEV 571
            +I+ + +
Sbjct: 447 GKIKGRSL 454