Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  271 bits (694), Expect = 5e-77
 Identities = 145/375 (38%), Positives = 220/375 (58%), Gaps = 11/375 (2%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F+ L L+ A+  A+   G+  PTP+Q  AIP +L+GRD +  AQTGTGKT  F+LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 86  NKL----------NLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
             L               +P+ +V+ PTRELA QV    K   +++  LK   I+GG  +
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLP-LKSTCIFGGVGM 119

Query: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
             Q++A+  G  ++V  PGR+ DL  +  + L      +LDEAD ML MGF+ DV  ++ 
Sbjct: 120 NPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLA 179

Query: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEA 255
           + P   Q +LFSAT    + ++  + L NPE ++V   N TV ++EQ+ + V    K   
Sbjct: 180 KLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRAL 239

Query: 256 MARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
           +A L+     +  +VF RT+    RLA++L   G  AAA+HG+  Q+ R + +   K   
Sbjct: 240 LAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQ 299

Query: 316 IDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIR 375
           + ILVATD+ ARGLD+ ++ HV N+++P   E Y+HRIGRTGRAGR G+AI LV  ++ +
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 376 MLRTIERVTRSSMEE 390
           +L+ IER+T+  + E
Sbjct: 360 LLKGIERMTKQRIPE 374