Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  434 bits (1117), Expect = e-126
 Identities = 240/552 (43%), Positives = 358/552 (64%), Gaps = 19/552 (3%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F+ L ++SA+L+A++ +G+  P+PIQ+ AIPV+L G D +G+AQTGTGKTAAF+LP+L+K
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           ++ ++ + QA+++APTRELA+QVA   +   + + GL V+ +YGGA +  Q++A++ GA 
Sbjct: 68  IDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIRQGAQ 127

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           ++V TPGR+ D ++R+   L      +LDEADEMLK+GF+DD+  I E  PES Q VLFS
Sbjct: 128 VIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVLFS 187

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           AT+P  ++ I E+ LR P+ + +A   QTVA++EQ + +V   +K +A+ RLLE E+ DA
Sbjct: 188 ATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDA 247

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
            I FVRT+Q T  LA  L A+G+KAAAL+GDI Q+ RER ++ +K G +DI+VATDV AR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
           GLDV RITHV+N D+P+D ESY+HRIGRTGRAGR+G+A+LLV   + RML+ IERVT   
Sbjct: 308 GLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQK 367

Query: 388 MEEIQLPHRDKVAESRLTKLGQELA---ADKEFSSLERFADLVEKLQASLEIDATTLAAI 444
           + E +LP+  +V ++R+ KL   LA   AD E +      +L++KL A +      LAA 
Sbjct: 368 VAEARLPNAQQVLDARIKKLTNSLAPLVADAEAT----HGELLDKLVADIGCSPRALAAA 423

Query: 445 LLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDR--RDGDRPARREF---GGRDQEN 499
           LL++    + L     +     +     R R  R DR  R GDR  R       GR +  
Sbjct: 424 LLRKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRAR-- 481

Query: 500 HDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSS 559
                 +  +G   G+  ++++GA+ NE GL + +IG I++    + V+LP+     +  
Sbjct: 482 -----CRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLG 536

Query: 560 KLRKLRIRQKEV 571
           KL+  R+  K++
Sbjct: 537 KLKDTRVGGKQL 548