Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  272 bits (696), Expect = 3e-77
 Identities = 144/375 (38%), Positives = 225/375 (60%), Gaps = 11/375 (2%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F+ L L+ A++ A+   G+  PTP+Q  AIP +L+GRD +  AQTGTGKT  F+LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 86  NKL------NLSQY----KPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
            +L      + SQ     +P+ +V+ PTRELA QV    K   +++K +    I+GG  +
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSAC-IFGGVGM 119

Query: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
             Q++A+  G  ++V  PGR+ DL  +  + L      +LDEAD ML MGFV DV  ++ 
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179

Query: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEA 255
           + P   Q +LFSAT    +  +  + L NPE ++V   N TV ++EQ+ + +    K   
Sbjct: 180 RLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSL 239

Query: 256 MARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGV 315
           +A L+     +  +VF RT+    RLA++L   G  A A+HG+  Q+ R + +   K G 
Sbjct: 240 LAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGD 299

Query: 316 IDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIR 375
           + I+VATD+ ARGLD+ ++ HV N+++P   E Y+HRIGRTGRAGR G+AI LV  ++ +
Sbjct: 300 VRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 376 MLRTIERVTRSSMEE 390
           +L++IER+T+  + +
Sbjct: 360 LLKSIERMTKQKIAD 374