Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella amazonensis SB2B

 Score =  286 bits (733), Expect = 1e-81
 Identities = 159/422 (37%), Positives = 241/422 (57%)

Query: 25  AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84
           ++ FS L L + +L  L+ MG+   TPIQA ++P +L G D +G+ +TG+GKTAAF L L
Sbjct: 9   SLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGL 68

Query: 85  LNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144
           LNKL++ +++ Q +V+ PTRELA QVA EI+ L + I  +KVL + GG  +  Q+ +L+ 
Sbjct: 69  LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH 128

Query: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204
           GAHI+VGTPGR+ D + RDRL L   +  +LDEAD ML+MGF   +  I+ ++P   Q +
Sbjct: 129 GAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQTL 188

Query: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEE 264
           LFSAT P  ++ I ++ + NP  V VA +++     +  Y +     + +A+  LL   +
Sbjct: 189 LFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQLLLLEHK 248

Query: 265 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324
            ++++VF  T+++T+++AD L A GF   ALHGD+ Q  R+ T+         +LVATDV
Sbjct: 249 PESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 308

Query: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
            ARGLD+  +  V+NY +  D E +IHRIGRTGRAG KG A           +  +E   
Sbjct: 309 AARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYL 368

Query: 385 RSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAI 444
              ++   LP    +    L      L  D       R  D++  L     I+   +  I
Sbjct: 369 ERDIQSEPLPSASLLGSMPLAPAMITLQIDGGKKDKLRPGDILGALTGDKGIEGAQVGKI 428

Query: 445 LL 446
           L+
Sbjct: 429 LV 430



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T Q+  G+   ++  DI+GAL  + G+    +G I +     +V + + ++     K+  
Sbjct: 394 TLQIDGGKKDKLRPGDILGALTGDKGIEGAQVGKILVTDYRAYVAVDRKVAKKALGKITS 453

Query: 564 LRIRQKEVGA 573
            RI+ K   A
Sbjct: 454 GRIKGKSYRA 463