Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 637 a.a., ATP-dependent RNA helicase DeaD (RefSeq) from Shewanella amazonensis SB2B

 Score =  491 bits (1264), Expect = e-143
 Identities = 285/610 (46%), Positives = 377/610 (61%), Gaps = 17/610 (2%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F +L L  ++L AL E+G+ +PTPIQAA+I  L+ G+D LG+AQTGTGKT AF+LPLL  
Sbjct: 8   FRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCS 67

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           ++ +   PQ +V+APTRELA+QVA    +  +++KG  VL IYGG S+  Q++AL+ G  
Sbjct: 68  VDANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRRGPQ 127

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           +VVGTPGRV D + R  L LD     +LDEADEMLKMGF+DD+ WI+E  PES Q  LFS
Sbjct: 128 VVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLALFS 187

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           ATMP  +K +  + LRNP  + +A S+ TV  +EQ++  V    K EA+ R+LE E T+ 
Sbjct: 188 ATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEG 247

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
            I+FVRTR     LA+ L ARG+ A+ LHGD+ Q  RER VD +K G +DIL+ATDV AR
Sbjct: 248 IIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVAAR 307

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
           GLDV RI HV NYDIP+D E+Y+HRIGRTGRAGR G AIL V + ++RMLRTIER T S 
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSR 367

Query: 388 MEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAILLK 447
           +  +++P  + VAE RL++LG+++A       L+     V +L   LE+D   LAA LL 
Sbjct: 368 ISPMKIPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTEQLAAALLH 427

Query: 448 RQQGKRPLFYVG-----ADPMIEAMEREKSRRRER--RDDRRDGDRPARREFGGRD--QE 498
           + Q +RPL          D   E   R ++ R ER  R++RR   RP    FG  D  ++
Sbjct: 428 QVQLERPLQLPAMHERQRDNFDERTGRGQNDRAERGDRNERRRDSRPLPGNFGSADTLKD 487

Query: 499 NHD--WDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSND 556
           N D     Y + VGRD  V V +IVGA+ANE  +    IG I+L    T V LP  M  +
Sbjct: 488 NPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDLPDGMPKE 547

Query: 557 VSSKLRKLRIRQK--EVGAVVCD-FDDFRESRGGARREGGPRREGGRRPE-GNREGGFRG 612
           V   L+K+R+  K   +  V  D  D+   S G   +    R+  G RPE G R+   RG
Sbjct: 548 VLQHLKKVRVCGKPLNIREVSTDGSDEIPVSNGPIPKR--TRKPSGDRPERGERKFNDRG 605

Query: 613 GREGGREGGR 622
           G  G R G R
Sbjct: 606 GDRGDRGGDR 615