Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., DEAD/DEAH box helicase from Parabacteroides merdae CL09T00C40

 Score =  340 bits (873), Expect = 8e-98
 Identities = 207/599 (34%), Positives = 323/599 (53%), Gaps = 30/599 (5%)

Query: 44  MGFVSPTPIQAAAIPVLL-EGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAP 102
           MG+ SP P+Q   IP LL +  D +  AQTGTGKTAAF LP+L K++++ Y PQA+V+ P
Sbjct: 1   MGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLPILQKIDVTTYHPQALVLCP 60

Query: 103 TRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITR 162
           TREL +Q+A ++ +  + I  LKVL +YGG+SI  Q++ LK G H+VV TPGR+ DL+ R
Sbjct: 61  TRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRLLDLMNR 120

Query: 163 DRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFL 222
             + L      I+DEADEML MGF D +  I+ + PE+   +LFSATMP  +  I ++++
Sbjct: 121 KTVDLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNMLLFSATMPKEIANITKKYM 180

Query: 223 RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLA 282
           +NP+ + +   N+    +   Y++V+  +K  A+ R+ +       IVF RTR++T+ +A
Sbjct: 181 KNPKEIVIGNKNEGNKNIRDIYYMVQARDKYLALKRIADFYPNIYGIVFCRTRKETQEIA 240

Query: 283 DWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDI 342
           D L   G+ A +LHG++ Q+ R+  +   +   I +LVATDV ARGLDV  +THV NY +
Sbjct: 241 DKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLLVATDVAARGLDVDDLTHVINYGL 300

Query: 343 PFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAES 402
           P +VESY HR GRTGRAG+ G +I +    +   +R IER+     E+ ++P    + E 
Sbjct: 301 PDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIREIERIINKKFEKGEMPTGHAICEK 360

Query: 403 RLTKLGQELAADKEFSSLERFADLVEKLQASLE-IDATTLAAILLKRQQGKRPLFYVGAD 461
           +L  L  ++  +K   + E  A L+ ++   LE +D   +   ++  +  +   +Y  AD
Sbjct: 361 QLFNLVDQI--EKVKVNEEEIASLMPQIYRKLEWLDKEDIIKRVVSLEFNRMIDYYKDAD 418

Query: 462 PMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQLQVGRDQGVQVKDIV 521
            + +  ER  S R ER      G+R A     G       +  + L  G+  G+    ++
Sbjct: 419 EIQQVDER--SSRSER------GERRAHAAEEG-------YSRFFLNFGKADGLYPNQLI 463

Query: 522 GALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLRIRQKEVGAVVCDFDDF 581
             L N+    K  IG I L +  +F ++ +  +  V   +    +  + +          
Sbjct: 464 -ELVNKCVPGKVRIGKIDLRENFSFFEVEEGEAQRVMDSMNGFEVDGRRISVEPAQGKKE 522

Query: 582 RESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREGGRGRGGEGRPFREGERRFER 640
              RGG R  GG R + G +       G RG ++ GR GG       R FR+ ER  +R
Sbjct: 523 EGGRGGKRSYGGRRSDDGYK-------GKRGSKDSGRRGG---DRSDRTFRKDERDSDR 571