Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  276 bits (706), Expect = 2e-78
 Identities = 174/481 (36%), Positives = 264/481 (54%), Gaps = 22/481 (4%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F+ L L++ IL A+ + G+ +P+PIQA AIP +L G+D +  AQTGTGKTA F+LPLL
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 86  NKLNLS----QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRA 141
             L+        + +A+V+ PTRELA Q+A  +   GQ++  L+   ++GG  I  Q+  
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLP-LRSAVVFGGVGISPQISQ 119

Query: 142 LKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESA 201
           LK G  I+V TPGR+ DL  +D +   +  T +LDEAD ML MGF+ D+  I+   P   
Sbjct: 120 LKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKR 179

Query: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
           Q ++FSAT    ++ + +  + NP  + V   N T   V+Q    V   +K  A+ +L++
Sbjct: 180 QNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQ 239

Query: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
             +    +VF RT+    RLA  L A+G  AAA+HG+  Q  R + + + K G + +LVA
Sbjct: 240 QGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVA 299

Query: 322 TDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
           TD+ ARGLD+ ++  V N+D+P   E Y+HRIGRTGRAG  GKA+ LV   + ++L  IE
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIE 359

Query: 382 R-----VTRSSMEEIQLPHRDKVAESRLT--KLGQELAA--DKEFSSLERFADLVEKLQA 432
           R     + R+ +E  +  H   + E+ LT  + GQ       K  S+ +R ++     Q 
Sbjct: 360 RLIGKLLPRAEVEGFEPTH--TLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQR 417

Query: 433 SLEIDATTLA--AILLKRQQGKRPLFYVGADPMIEAMERE-KSRRRERRDDRRDGDRPAR 489
           S +         A   K  QG+R     GA         E +  + + + + RDG+ PAR
Sbjct: 418 SDKAGQPRRGDQAQGNKEGQGRR---RTGASTGTSKPASEGQQAQNQGKQEHRDGNAPAR 474

Query: 490 R 490
           R
Sbjct: 475 R 475