Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella loihica PV-4

 Score =  276 bits (705), Expect = 2e-78
 Identities = 144/338 (42%), Positives = 215/338 (63%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F  L LN A+L  L  +GF   TPIQA ++P +L G+D +G+ +TG+GKTAAF L LLNK
Sbjct: 13  FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           L++ +++ Q +V+ PTRELA QVAAE++ L + I  +K+L + GG  +  Q+ +L+ GAH
Sbjct: 73  LDVKRFRIQTLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEHGAH 132

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           I+VGTPGR+ D + R RL LD   T +LDEAD ML+MGF  ++  IM++ P   Q +LFS
Sbjct: 133 IIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTLLFS 192

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           AT P  ++ + E+F+ +P  V V   +   +  +  Y      ++ +A+  LL   + ++
Sbjct: 193 ATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLLKHQPES 252

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
           ++VF  T+++T+ +A  L   GF   ALHGD+ Q  R++ +         ++VATDV AR
Sbjct: 253 AVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVATDVAAR 312

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKA 365
           GLD+  +  V NY + +D E +IHRIGRTGRAG KG A
Sbjct: 313 GLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAA 350



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 18/70 (25%), Positives = 37/70 (52%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T Q+  G+ Q V+  DI+G L  + G+    +G IK+ +  ++V + + +     +K+ K
Sbjct: 395 TIQIDGGKKQKVRPGDILGCLTGDNGIEGSEVGKIKITEFRSYVAVDRKVLRKALNKIVK 454

Query: 564 LRIRQKEVGA 573
            +++ K   A
Sbjct: 455 GKLKGKSYRA 464