Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  273 bits (699), Expect = 9e-78
 Identities = 143/362 (39%), Positives = 218/362 (60%), Gaps = 7/362 (1%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + FS L+LN+ ++  L E+G+  PTPIQ  AIP +L  +D +  AQTGTGKTAAF+LP+L
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 86  NKL---NLSQYKPQAI---VMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQM 139
             L   N S +  +AI   V+ PTRELA+QV        +    ++V   YGG SI  Q 
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQ 119

Query: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
               +G  +++ TPGR+ D + +  L+L++ +T + DEAD ML MGF+D++  +++Q P 
Sbjct: 120 AVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPA 179

Query: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL 259
             Q +LFSAT+   +    +  LR+P+ ++VA  N T A++EQ+ + +    K E ++ L
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHL 239

Query: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
           + ++     ++F RT+Q  ++L   L   G    + HGD+ Q  RE+ +   KQG++ +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299

Query: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
           VATDV ARGLD+  + +V N+++PF  E YIHRIGRTGRAG  G AI L       +L  
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359

Query: 380 IE 381
           +E
Sbjct: 360 VE 361