Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., ATP-dependent RNA helicase DbpA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  282 bits (721), Expect = 3e-80
 Identities = 158/419 (37%), Positives = 239/419 (57%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           FS L L + +L  L+ MG+   TPIQA ++P +L G D +G+ +TG+GKTAAF L LLNK
Sbjct: 3   FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 62

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           L++ +++ Q +V+ PTRELA QVA EI+ L + I  +KVL + GG  +  Q+ +L+ GAH
Sbjct: 63  LDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 122

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           I+VGTPGR+ D + R+RL L   +  +LDEAD ML+MGF   +  I+EQ+P   Q +LFS
Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 182

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           AT P  ++ I ++ + NP  V  A +++     +  Y +     + +A+  LL   + ++
Sbjct: 183 ATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPES 242

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
           ++VF  T+++T+++AD L   GF   ALHGD+ Q  R+ T+         +LVATDV AR
Sbjct: 243 AVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 302

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
           GLD+  +  V+NY + +D E +IHRIGRTGRAG KG A           +  +E      
Sbjct: 303 GLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDRE 362

Query: 388 MEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAILL 446
           +    LP    +  +        L  D       R  D++  L     I+ T +  IL+
Sbjct: 363 ITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILV 421



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T Q+  G+ + ++  DI+GAL  + G+    +G I +     +V + + ++    SK+  
Sbjct: 385 TLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILVTDYRAYVAVNRKVAKKALSKITS 444

Query: 564 LRIRQKEVGA 573
            RI+ K   A
Sbjct: 445 GRIKGKSYRA 454