Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  364 bits (934), Expect = e-105
 Identities = 217/540 (40%), Positives = 307/540 (56%), Gaps = 33/540 (6%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F DL L   +L A+ E+GF  P+PIQ+ AIP LLEGRD +G+AQTGTGKTAAF LPLL +
Sbjct: 7   FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           ++ +    QA+V+ PTRELA+QVA  +  L ++++G+++L +YGG  I  Q  AL+ GA 
Sbjct: 67  IDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGAQ 126

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           +VVGTPGR+ D I R  L L      +LDEADEML MGF +D+  I+ + PE  Q   FS
Sbjct: 127 VVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFS 186

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           ATMP  + E+  RFLR PE + V     TVA  EQ ++ V+   + +A+ R+ +      
Sbjct: 187 ATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYIPRK 246

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
           +IVF  T+Q  + LA  L  RG  A ALHGD+ Q+ RER +   + G I +LVATDV AR
Sbjct: 247 AIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAAR 306

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
           GLDV  +  V N+D+P D E+Y+HRIGRTGRAGR G+A        +  LR I+RVT S 
Sbjct: 307 GLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRVTGSR 366

Query: 388 MEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAILLK 447
           ++   +P     + +R  +L +E+AA    +       +VEKL A    D T LAA LL+
Sbjct: 367 IDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAE-GADPTQLAATLLR 425

Query: 448 RQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQL 507
                              M+R++      R     G    R  F               
Sbjct: 426 M-----------------IMQRDRIDLPGARQTDDIGTGRVRLFFN-------------- 454

Query: 508 QVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLRIR 567
            VGR   +  +D+VGA+A E G++  SIG+I++    +FV++  +++ +V S +   +IR
Sbjct: 455 -VGRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIR 513