Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  278 bits (711), Expect = 5e-79
 Identities = 184/501 (36%), Positives = 258/501 (51%), Gaps = 22/501 (4%)

Query: 8   RGTLVISSFSGIPMQDTA---IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGR 64
           R   V +  +GI   + A   +QF+DLA    +  A    G+ S  P+QA A+P L +GR
Sbjct: 18  RAARVAAEITGIDEPEDALPSVQFADLA--PRLQEACIRAGWQSLMPVQAHALPYLFDGR 75

Query: 65  DALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGL 124
           D + +++TG+GKT AF LPLL +L+ ++   QA+V+ PTRELA+QV  E + L +   GL
Sbjct: 76  DLMVQSRTGSGKTGAFLLPLLERLDPAEASTQALVLVPTRELALQVEHEARTLFEGT-GL 134

Query: 125 KVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKM 184
           +V  +YGG     Q  AL+ GAH VVGTPGRV D + R  + LD       DEAD ML +
Sbjct: 135 RVAAVYGGVGYGKQNDALREGAHFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLSI 194

Query: 185 GFVDDVTWIMEQAPESA-QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQ 243
           GF  D+  I    P+      LFSAT PP V  +   FLR P+ + ++ S   VA+ +  
Sbjct: 195 GFYPDMKEIQRYLPKRRIATCLFSATYPPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHM 254

Query: 244 YWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSL 303
           +   K ++KD A+ RLLE E   ++I+F  T+ +   +   L   G+ A  L  D+ QS 
Sbjct: 255 FCESKPMDKDRALIRLLEIENPSSAIIFCNTKANVHYITAVLQGFGYNADELSADLSQSK 314

Query: 304 RERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKG 363
           RE+ ++ ++   +  LVATDV ARG+D+P ++HV  Y+ P D ESYIHR GRTGRAG  G
Sbjct: 315 REQVLERLRNNEVRFLVATDVAARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVG 374

Query: 364 KAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAE---SRLTKL---GQELAADKEF 417
             I LV   Q   L+ I R  R  +     P  + VA     RLT L           + 
Sbjct: 375 TVISLVDIMQKLELQRIARHYRMDIAHRPTPQDEDVARVVGDRLTALLEGAYRQCTGLQR 434

Query: 418 SSLERFADLVEKLQASLEIDATTLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRER 477
             ++RF D+   L A  E     L A+LL  +       Y  +   +    R +     R
Sbjct: 435 ERIQRFTDVARTLAADEE--QVVLLAMLLDEK-------YQQSLHAMPPRPRPQRASASR 485

Query: 478 RDDRRDGDRPARREFGGRDQE 498
             D      P RR  G RD E
Sbjct: 486 AVDSESDTAPRRRSRGRRDDE 506