Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  336 bits (862), Expect = 2e-96
 Identities = 209/637 (32%), Positives = 332/637 (52%), Gaps = 30/637 (4%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLL-EGRDALGKAQTGTGKTAAFSLPLLN 86
           F +L ++  I  A+ EMG+ +P P+Q   IP LL E  D +  AQTGTGKTAAF LPLL 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 87  KLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146
           ++++    PQ++++ PTREL +Q+A ++ +  + I GLKVL +YGG+SI  Q+R+LK G 
Sbjct: 64  QIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLKRGV 123

Query: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206
           HI+V TPGR+ DL+ R  + L   H  ++DEADEML MGF D +  I+   P+    +LF
Sbjct: 124 HIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLLF 183

Query: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266
           SATM P +  I + +L+N + + +   N++ + V+   + V+  +K  A+ R+++     
Sbjct: 184 SATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAALKRIVDYYPQI 243

Query: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
             I+F RTR++T+ +AD L   G+ A +LHG++ Q+ R+  +   +   + +LVATDV A
Sbjct: 244 YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATDVAA 303

Query: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386
           RGLDV  +THV NY +P D ESY HR GRTGRAG+ G +I ++   +   LR IER+   
Sbjct: 304 RGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREIERIIGK 363

Query: 387 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLE-IDATTLAAIL 445
                ++P   ++ E +L K+  EL  +K   + E   D + ++   LE +    L   +
Sbjct: 364 KFIAGEMPTGKQICEKQLIKVIDEL--EKVKVNEEEITDFMPEIYRKLEWLSKEDLIKRM 421

Query: 446 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 505
           +  +  +   +Y   +   E      SR R  RD R  G R A   F             
Sbjct: 422 VSHEFNRFLDYYRDRE---EIETPTDSRERNTRDSRERGSRKAAPGF----------TRL 468

Query: 506 QLQVGRDQGVQVKDIVGALANELGLTKGSI--GAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
            + +G+       +++  L +    T+G I  G I L +  +F ++ +  + +V   L +
Sbjct: 469 FINLGKMDSFFPSELISLLNSN---TRGRIELGRIDLMKNFSFFEVEEKEAQNVVKALNR 525

Query: 564 LRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREGGRG 623
                ++V   V       E+  G R  G   R GG+RP G+            R     
Sbjct: 526 ANWNGRKVSVEVAG----EEAGEGRRGSGSAERRGGKRPFGSSSEKRSDSSRNSRSERSD 581

Query: 624 RGGEG-RPFREGERRFERNRSGESSGSYRGERGHSRR 659
           R     R  +  ++  ++ RS + S   R ERG+  R
Sbjct: 582 RAPRADRATKGSDKTDKKKRSDKPS---REERGYGAR 615