Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  480 bits (1236), Expect = e-140
 Identities = 271/592 (45%), Positives = 364/592 (61%), Gaps = 10/592 (1%)

Query: 21  MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF 80
           M  +   F +L L+  +L AL E+G+ +PTPIQ+A+I  L+ G+D LG+AQTGTGKT AF
Sbjct: 1   MSSSERTFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 81  SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR 140
           +LPLLNK+  SQ  PQ +V+APTRELA+QVA    +  + +KG  VL IYGG S+  Q+ 
Sbjct: 61  ALPLLNKVT-SQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLN 119

Query: 141 ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200
           ALK G  ++VGTPGRV D + R  L L+     +LDEADEMLKMGF+DD+ WI+E  PE 
Sbjct: 120 ALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQ 179

Query: 201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260
            Q  LFSATMP  +K +  + L++   + +A S+ TV  +EQ++  V    K EA+ R+L
Sbjct: 180 RQLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL 239

Query: 261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
           E E T+  I+FVRTR     LA+ L ARG+ ++ LHGD+ Q  RER V+ +K G +DIL+
Sbjct: 240 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILI 299

Query: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
           ATDV ARGLDV RI HV NYDIP+D E+Y+HRIGRTGRAGR G AIL V + ++RMLRTI
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 440
           ER T S +  +++P  + VAE RL++LG++LA       L+   + V +L   LE+D   
Sbjct: 360 ERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMT-QDLDFMREAVAQLCQQLEVDTDL 418

Query: 441 LAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGD-RPARREFGG----R 495
           LAA LL + Q +RPL              E+   R  R +RR  + RP     G     +
Sbjct: 419 LAAALLHQVQQERPLQLPAIQERTRDERSERGAERGERGERRSRESRPMPASLGSAEALK 478

Query: 496 DQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSN 555
           D  +     Y + VGRD GV V +IVGA+ANE  +    IGAI+L    T V LP  M  
Sbjct: 479 DNPDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPK 538

Query: 556 DVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNRE 607
           +V   L+K+R+  K +         F +S  GAR +  PR   G RP G R+
Sbjct: 539 EVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPR---GDRPMGERK 587