Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella sp. ANA-3

 Score =  283 bits (724), Expect = 1e-80
 Identities = 150/370 (40%), Positives = 226/370 (61%)

Query: 25  AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84
           ++ FS L L   +L  LT MG+   TPIQA ++P +L G D +G+ +TG+GKTAAF L L
Sbjct: 21  SMAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGL 80

Query: 85  LNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144
           LNKL++ +++ Q +V+ PTRELA QVA EI+ L + I  +KVL + GG  +  Q+ +L+ 
Sbjct: 81  LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEH 140

Query: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204
           GAHI+VGTPGR+ D + R+RL L   +  +LDEAD ML+MGF   +  I+EQ+P   Q +
Sbjct: 141 GAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTL 200

Query: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEE 264
           LFSAT P  ++ I ++ + +P  V VA +++     +  Y +     + +A+  LL   +
Sbjct: 201 LFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRK 260

Query: 265 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324
            ++++VF  T+++T+++AD L   GF   ALHGD+ Q  R+ T+         +LVATDV
Sbjct: 261 PESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDV 320

Query: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
            ARGLD+  +  V+NY + +D E +IHRIGRTGRAG KG A           +  +E   
Sbjct: 321 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYL 380

Query: 385 RSSMEEIQLP 394
              ++   LP
Sbjct: 381 ERDIQSEALP 390



 Score = 35.0 bits (79), Expect = 8e-06
 Identities = 19/70 (27%), Positives = 35/70 (50%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T Q+  G+ + ++  DI+GAL  E G+    +G I +     +V + + ++    SK+  
Sbjct: 406 TLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITS 465

Query: 564 LRIRQKEVGA 573
            RI+ K   A
Sbjct: 466 GRIKGKSYRA 475