Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  227 bits (578), Expect = 2e-63
 Identities = 144/436 (33%), Positives = 229/436 (52%), Gaps = 8/436 (1%)

Query: 188 EIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEH-EELAVIHIGFANARQ 246
           ++  RR  E+++ Y   +D  TG  NR   +++L     ++  +   +AV++I     + 
Sbjct: 512 DLSVRRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKL 571

Query: 247 LQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCHRLI 306
           L   LG+   D +L+++  RL          AR +     ++L A+   + L  L  RL+
Sbjct: 572 LNESLGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSSLAHLGSRLL 631

Query: 307 HAGQAQFVTEGLPVHLNPYIGVALSRE-TRDPQQLLRHAVSSMLACKDSG---YKVFFHS 362
              +   V +   + ++  IGV+L  + +RD + LLR A  +M   K  G    + F   
Sbjct: 632 QRIRKPMVIDEQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFFTDR 691

Query: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422
           P  +  H  Q  LEN L +A+    L +++QP++S+       AEAL+RW+HP LG  + 
Sbjct: 692 PQASSMHYLQ--LENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVAP 749

Query: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAV-CPTFCIAINVSSVQLKNSGFVEQIR 481
              I +AE+ GLI  +G FVL +A + A  W         +++N+S  QL+   FV  +R
Sbjct: 750 AQFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFVSLVR 809

Query: 482 DLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLKK 541
            +L     PA  LELE+TES L+ D   A  I  +L  LGV L++DDFGTG++S  YLK+
Sbjct: 810 QVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKR 869

Query: 542 FPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGCD 601
           FP D +KID+SF+ ++EHS  D  I R+++ +   L   VV EG+E+  Q  F+    CD
Sbjct: 870 FPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCD 929

Query: 602 VGQGFLYGKPMPSEVF 617
             QG+L   P+P+  F
Sbjct: 930 EIQGYLLSPPVPALQF 945



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 17/79 (21%)

Query: 181 LNQSLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIG 240
           LN  L  E+++RR AEQQ+  QR++D          LEQ++  + A+LA   E     +G
Sbjct: 229 LNVRLANEVEQRRRAEQQL--QRAYD---------GLEQRVVERTAELARAAE----ELG 273

Query: 241 FANARQLQA--RLGYHLWD 257
            + AR   A    G  LWD
Sbjct: 274 ESEARLNLALDASGLGLWD 292