Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 778 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  211 bits (537), Expect = 1e-58
 Identities = 144/442 (32%), Positives = 223/442 (50%), Gaps = 11/442 (2%)

Query: 187 QEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAE-HEELAVIHIGFANAR 245
           Q+I +R+  +QQ+E Q +HDL TG  NR  L  ++   LA+ A     L ++ I   N +
Sbjct: 333 QDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDNFK 392

Query: 246 QLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCHRL 305
            +   LG+   D++LK +  RL     G    AR       L+L  H   + +  L  R+
Sbjct: 393 FINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLSDHYRISTVISLLERV 452

Query: 306 IHAGQAQFVTEGLPVHLNPYIGVAL-SRETRDPQQLLRHAVSSMLACKDSG---YKVFFH 361
           ++  +      G    +   IGVA+   +  D Q LL+HA  +M A K  G   ++ F H
Sbjct: 453 LNEIRRPVTLAGREFQVGASIGVAMFPGDGEDAQTLLKHADIAMYAAKKRGRNNFQFFTH 512

Query: 362 S-PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEF 420
               +AD       LE  +  A+  ++  +++QPKV   ++R VG EAL RW    LG  
Sbjct: 513 DLNRIADERLN---LEAAMRAALERDEFSVHYQPKVDA-SRRIVGVEALARWTDAQLGVI 568

Query: 421 SNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAV-CPTFCIAINVSSVQLKNSGFVEQ 479
             +  I +AE++GLI  +   VL +A   A  W A       +A+N+S +       V++
Sbjct: 569 GPDRFIPVAEESGLIMPLTLAVLRRAFSDARQWNAGRAIPLMVAVNLSPLLFLGDDVVDR 628

Query: 480 IRDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYL 539
           +  +L     P +Q+ELEITE+  + D   A  IL      G  L++DDFGTGY++  YL
Sbjct: 629 VCTVLDDVGLPPNQVELEITETVFLGDGTRAVAILAEFKARGFRLAMDDFGTGYSALSYL 688

Query: 540 KKFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQG 599
           ++FP D IKID+S +  +E  E    I R+ + + K L+  VV EG+E+  Q  F+   G
Sbjct: 689 RRFPLDIIKIDRSLVTGLEQEEEVAMIARAAISLGKSLHKTVVAEGVENAAQFDFLCRNG 748

Query: 600 CDVGQGFLYGKPMPSEVFTLKL 621
           CD  QG+L  +P+P+  FT  L
Sbjct: 749 CDEFQGYLLSRPLPAAQFTALL 770