Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 852 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  232 bits (591), Expect = 6e-65
 Identities = 140/430 (32%), Positives = 223/430 (51%), Gaps = 5/430 (1%)

Query: 188 EIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIGFANARQL 247
           ++ +   A+ +++Y   HD  TG  NR+ L   L   LA L     + +++I     + +
Sbjct: 416 DVTEETKAQARVQYLSQHDPLTGLPNRSRLRDYLEQNLASLRSGSTMTLLYIDLDRFKPV 475

Query: 248 QARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCHRLIH 307
              LG+   D+VL  +  RL   T    L AR       + L     D  +++LC+R+I 
Sbjct: 476 NDTLGHAAGDEVLMGVASRLRERTRDGDLVARLGGDEFVVALHRMSEDEDIDRLCNRIIE 535

Query: 308 AGQAQFVTEGLPVHLNPYIGVALS-RETRDPQQLLRHAVSSMLACKDSGYKVFFHSPALA 366
           A  + F  E   + +   IGVAL+  +     +LLR A  ++   KD+G   +       
Sbjct: 536 ALSSPFAYENHQISIGASIGVALAPMDATQANELLRCADIALYQAKDAGRGTWRAYGRDM 595

Query: 367 DNHARQN-QLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSNETL 425
           D    +  + E  L  A+    L +++QP+   +  R +GAEAL+RW HP  G    E  
Sbjct: 596 DQRLHERLRREEQLRVAIAEQHLEVHYQPRYLSQGMRIIGAEALVRWHHPTHGLLLPEQF 655

Query: 426 IHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFCIAINVSSVQLKNSGFVEQIRDLLA 485
           I +AE+ GLI  +G +VL QA + A+ W        +++N+S +QL +   +++I   L 
Sbjct: 656 IPLAEETGLIIPLGRWVLQQACQQAATWPV---DMVVSVNLSPLQLHDDRLLDEISQALH 712

Query: 486 LYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLKKFPFD 545
                  +LELEITES L+ +  +  D+L R+  LGV L++DDFGTGY+S   L+ +PFD
Sbjct: 713 ENGLAGERLELEITESALLQETQSTLDLLKRIKALGVHLAVDDFGTGYSSLTSLRHYPFD 772

Query: 546 GIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGCDVGQG 605
            IKID SF+  IE S  D  IVR+++ + + L + V  EG+E+ +Q + + + GC   QG
Sbjct: 773 VIKIDNSFVAGIEQSMEDHSIVRALIELGRGLQMRVTAEGVETEEQLRLLTDDGCTEVQG 832

Query: 606 FLYGKPMPSE 615
           F    PMP+E
Sbjct: 833 FHMSLPMPAE 842