Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq) from Shewanella loihica PV-4

 Score =  442 bits (1137), Expect = e-128
 Identities = 237/613 (38%), Positives = 366/613 (59%), Gaps = 8/613 (1%)

Query: 9   IPIPSSMQANWQQMLNLLAEVLKVSATLIMRLRHHDLDVFCTSVGSDNPYQVGMTERLGT 68
           + +P  M   WQQ L+LL+E++   A LIMR+   D+ VF TS   DNPY+   TE LG 
Sbjct: 27  LAVPDEMFNGWQQTLDLLSEIVDTPAILIMRVTERDISVFTTSHHPDNPYKRHDTESLGH 86

Query: 69  GLYCETVVNTRQILLVSNADLDPLWKDNPDLELGMRAYCGVPLQWPNGELFGSLCVTDRQ 128
           GLYCETV+  +  L+V NA  D  W  NPD++LGM AYCG+PL WPNG+ FG+LC+ D +
Sbjct: 87  GLYCETVIKRQAELVVPNALKDKEWDRNPDIKLGMIAYCGLPLTWPNGQPFGTLCMLDNK 146

Query: 129 ARQFLSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFKVRHKMQSIASLNQSLHQE 188
            R +  T + L+  F  +I A L +LYQ   L  +NQ L  KV+ +   + SLN+ L  E
Sbjct: 147 ERDYGRTFRHLLARFQNAINANLASLYQSAKLFHLNQVLETKVQQRTLELTSLNKKLLSE 206

Query: 189 IDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIGFANARQLQ 248
           I++R   E  +++ + HD  TG  NR     QL+ QL+Q  +     VI+ G  N + + 
Sbjct: 207 IEQRTVIENSLQFHKDHDPLTGLANRLGFVNQLSQQLSQ-PDELSTYVIYFGLRNFKSIN 265

Query: 249 ARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKA-HPLDTQLNQLCHRLIH 307
              GY + D VL+   +R+  + + + L AR       +  +  +PL+     L   +I 
Sbjct: 266 ESYGYVVGDKVLQLFSQRIKRILDKDTLFARIAGAEFVIAHRGKNPLEL---PLIDSIIQ 322

Query: 308 AGQAQFVTEGLPVHLNPYIGVALS-RETRDPQQLLRHAVSSMLACKDSGYKVFFHSPALA 366
                F      +++   IGVA++  + ++  +L++ A ++M   K       F +    
Sbjct: 323 TANIPFALAEFSINIPCCIGVAVAPTDAQEASELMQKAGAAMSISKAEATPYSFFNKHTQ 382

Query: 367 DNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSNETLI 426
            N  R+  LE++L+ A+++ +L L++QP  S++ +R +GAEALLRW  P LG+   +  I
Sbjct: 383 TNIERRCLLESHLVDALKHQELSLHYQPLFSLQHKRVIGAEALLRWHSPQLGDVPPDQFI 442

Query: 427 HMAEQNGLIFEVGHFVLHQALKAASDWLAVCPT--FCIAINVSSVQLKNSGFVEQIRDLL 484
            +AE NG I  +G+FVLH A++ A+ W +  P+  F +AIN+S +Q +++ F + I +LL
Sbjct: 443 SLAEHNGQIIAIGNFVLHTAIEQAAKWRSQDPSRPFRVAINISPLQFRDTDFADYIANLL 502

Query: 485 ALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLKKFPF 544
           +LY  PA  LELEITE  L+ DE  A  I+ +L  LGV +SLDDFGTGY+S  YL+K+ F
Sbjct: 503 SLYRLPASSLELEITEGVLLQDEQLAQHIIGQLQALGVRISLDDFGTGYSSLSYLQKYSF 562

Query: 545 DGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGCDVGQ 604
           D +KID+ F+  +E +E D+E+ R+++ + KKL LNV+ EG+E+  Q+ FI ++ CD GQ
Sbjct: 563 DTLKIDRCFITNLEKNEQDRELTRAIIAMGKKLTLNVIAEGVETQAQDAFIRQEECDFGQ 622

Query: 605 GFLYGKPMPSEVF 617
           G+LYG+P+ ++ F
Sbjct: 623 GYLYGRPVDAQTF 635