Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  216 bits (549), Expect = 4e-60
 Identities = 144/429 (33%), Positives = 224/429 (52%), Gaps = 5/429 (1%)

Query: 188 EIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHE-ELAVIHIGFANARQ 246
           +I  ++ +E+++     HD  T   NR  L   L  +L   A  E ELA+I I     + 
Sbjct: 398 DISAQKQSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKH 457

Query: 247 LQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCHRLI 306
           +    G+   D +L ++  RLG     E   AR  S     +L     D  ++ +  RL 
Sbjct: 458 INDSYGHVTGDAILVEVARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSVSLMVSRLR 517

Query: 307 HAGQAQFVTEGL-PVHLNPYIGVAL-SRETRDPQQLLRHAVSSMLACKDSGYKVF-FHSP 363
            A  A F+ +    V L   +GVA+   +      LLR+A ++M   K +G   + F++ 
Sbjct: 518 EAFDAPFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQ 577

Query: 364 ALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSNE 423
           +L        +L++ L  A+  +   L +QPK+++ T + VG EALLRW+ P LG  S  
Sbjct: 578 SLTLASVEHLKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPA 637

Query: 424 TLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFC-IAINVSSVQLKNSGFVEQIRD 482
             I +AE  GLI E+G +VL QA    + WLA    F  I++NV+  QL+   F  Q++ 
Sbjct: 638 IFIPVAENIGLINEIGLWVLKQAATQGAQWLAEGKRFGRISVNVAGPQLQQKQFCAQVKR 697

Query: 483 LLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLKKF 542
           +L     P   LELE+TES ++ D     ++L +L  LGV LS+DDFGTGY+S  YLK+ 
Sbjct: 698 VLDEAGLPPEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRL 757

Query: 543 PFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGCDV 602
           P   +KID+SF+  I    ++  I ++++ +   LNL ++ EG+E+ +Q  F+   GCD 
Sbjct: 758 PIHKLKIDQSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQ 817

Query: 603 GQGFLYGKP 611
            QG+LY KP
Sbjct: 818 AQGYLYSKP 826



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 26/162 (16%)

Query: 9   IPIPSSMQANWQQMLNLLAEVLKVSATLIMRLRHHDLDVFCTSVGSDNPYQVGMTERLGT 68
           I IP     +WQ+ L  LA+    S  L+       L    +    +  ++  + +    
Sbjct: 15  IKIPDEALQDWQEALETLAQAFDGSLFLLALTASDGLTPQLSLCDDNQVHRQSVAQLCAQ 74

Query: 69  GL-----YCETVVNTRQILLVSNADLDPLWKDNPDLELGMRAYCGVPLQWPNGELFGSLC 123
           GL     Y E   + R+ + V    L PL+                   WP+  L+G+LC
Sbjct: 75  GLSLFRDYIEHPHHPREPVDVGGIILHPLF-------------------WPSQALYGALC 115

Query: 124 VTDRQARQFLSTDQQLIKTFAESIEAQLKTLYQ--RETLLQM 163
           +   +           +K   ++++  L  LYQ  R+ L+++
Sbjct: 116 LVPNEQANHNKRLNTQVKLTCQAMQYALINLYQTHRQQLIEI 157