Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  248 bits (633), Expect = 1e-69
 Identities = 160/501 (31%), Positives = 276/501 (55%), Gaps = 15/501 (2%)

Query: 122  LCVTDRQARQFLSTDQQLIKTFAESIEAQLKTLYQRETL--LQMNQDLHFKVRHKMQSIA 179
            L  + +Q   F S +QQL++    + E  ++   +R  L  L++NQ +  K         
Sbjct: 1005 LAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGE------T 1058

Query: 180  SLNQSLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEEL-AVIH 238
            S   ++  +I +R+ AE+ + +  S D  TG  NRT  + +L   ++Q      + A++ 
Sbjct: 1059 SHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLF 1118

Query: 239  IGFANARQLQARLGYHLWDDVLKQLRERL-GPVTEGELLTARPNSTNLTLILKAHPLDTQ 297
            +     + +   +G+H+ D +LK +  RL   V EG+ + AR      T+IL+       
Sbjct: 1119 LDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTV-ARLGGDEFTIILEGVAKTKA 1177

Query: 298  LNQLCHRLIHAGQAQFVTEGLPVHLNPYIGVAL-SRETRDPQQLLRHAVSSMLACKDSGY 356
               +  +++ A QA F+ +   ++++  IG++L   + +D   L++ A ++M   K  G 
Sbjct: 1178 ATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGR 1237

Query: 357  KVF-FHSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHP 415
              F F++  L +   R  QLE  L QA+ +N+L L +QPK  ++     G EALLRW+H 
Sbjct: 1238 NNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHS 1297

Query: 416  VLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAV-CPTFCIAINVSSVQLKNS 474
             LG  S    I +AE+ G+I ++GH+V++Q+ +  ++W  +      +A+N+S+ QLK +
Sbjct: 1298 ELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK-A 1356

Query: 475  GFVEQIRDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYA 534
              +  I   LA+   PA  LELE+TES ++ +   + +IL++L  LG+T+++DDFGTGY+
Sbjct: 1357 DIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYS 1416

Query: 535  SFQYLKKFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQF 594
            S  YLK+FP D +KID+ F+  I +   D  I  +++ +A  L LNVV EG+E+ +Q  F
Sbjct: 1417 SLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNF 1476

Query: 595  ILEQGCDVGQGFLYGKPMPSE 615
            +  QGCD  QGFL  KP+ ++
Sbjct: 1477 LALQGCDQVQGFLLSKPLSAQ 1497