Pairwise Alignments

Query, 225 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., lipoprotein releasing system ATP-binding protein LolD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (485), Expect = 1e-53
 Identities = 103/226 (45%), Positives = 146/226 (64%), Gaps = 6/226 (2%)

Query: 1   MQTSIISAQSLSKLVSTNQEHLTILKQVNLSIQAGESVAIVGASGAGKSTLMTLLAGLDT 60
           MQ  ++  Q++SK          +L  V+L +  GE +AIVG SG+GKSTL+ ++  LD 
Sbjct: 1   MQDVLLQVQAVSKSYHDGDVTTQVLSDVDLQVFKGEQLAIVGTSGSGKSTLLHIMGTLDK 60

Query: 61  PSEGEVYLLGKPLSQLDDEARAALRSESVGFVFQSFLLIPSLSALENVTLPCLLKGEAED 120
           PS G+V L G+ L Q+    +A +R++ +GF++Q   L+P  +ALENV +P  ++G   D
Sbjct: 61  PSSGKVLLAGEDLYQVSSARQAQIRNQDLGFIYQFHHLLPEFTALENVAMPAFIQGR--D 118

Query: 121 RERAQK----LLKAVGLEHRMHHSPAQLSGGEQQRVAIARAFMISPQVLFADEPTGNLDQ 176
           R  AQ     LL+ VGL HRM H PA+LSGGE+QRVAIARA +  P+++ ADEPTGNLD 
Sbjct: 119 RTLAQADAKVLLERVGLGHRMSHIPAELSGGERQRVAIARALINKPKLVLADEPTGNLDA 178

Query: 177 ETAAKVIDLLFELNREHGTTLVLVTHDPKLAQRCQRRFFMQAGELE 222
           ++   V +L+ EL  + GT  V+VTHDPKLA R  R+  M+ G L+
Sbjct: 179 KSGEAVYELIRELANQLGTAFVVVTHDPKLAARMDRQLTMKNGYLQ 224