Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 834 a.a., FIG00809136: hypothetical protein from Pseudomonas fluorescens FW300-N2E2

 Score =  352 bits (904), Expect = e-101
 Identities = 231/800 (28%), Positives = 411/800 (51%), Gaps = 34/800 (4%)

Query: 1   MKALPPASLNRRLLRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRD 60
           M  LP   L    +R  L + R G+L  +  AL + +A+  A+     R+   ++ +  +
Sbjct: 1   MARLPLLRLFSLAVRQLLRDARAGELRVLFFALLVAVAASTAIGYFGARLNGAMMMRATE 60

Query: 61  ALTADTVFVSGNPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLR 120
            L AD +    +P     +        + +++  F+++  +D G+QL +VKA D  YPLR
Sbjct: 61  FLGADLLLEGSSPARPEQIRNGTDLGLEHARVVEFSSVVATDNGIQLSSVKAADDRYPLR 120

Query: 121 GEMRLSDG----QQTFNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPG 176
           GE++ S      ++T       + W+E R+   L + IGD++ +G+    ++  +  EP 
Sbjct: 121 GELKSSPAPFAPEETGGRPNPGEAWVEARLLTALDLKIGDSIDVGNQTLRLARVLTYEPD 180

Query: 177 LSFNPFQQMPSVYIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVS--LTASDR 234
            + N +   P V I+  D++ TG +QPGSRV +     G  SA+++ +  V   L A+ R
Sbjct: 181 RAGNFYSLTPRVLINLKDLEATGVVQPGSRVSYRDLWRGPASALQTYRDLVKPGLEANQR 240

Query: 235 WRDQESGSRT-NEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGA 293
            +D   G+R       + ++YL++   + +L++   + L+   + + R    A+L+ LG 
Sbjct: 241 LQDARDGNRQIGGALGKAERYLNMASLVAVLLSGVAVALSANRFATRRFDASALLRCLGL 300

Query: 294 SRRWLRRWLALQVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYGLRPLWIALA 353
           SRR      +LQ+ +L + A + G+++G   +  L   L DLLP  +P  GL P  +A  
Sbjct: 301 SRRETMVLFSLQLTVLGLLASISGALLGWIAQLGLFALLHDLLPTTVPPGGLLPA-VAGI 359

Query: 354 SSFLIAVPALGIP----LGRLLSVSAVAVMQPVTAQTRWQRNLLLIMVPIVPLLLVYWQN 409
            + L+A+    +P    LGR+  +  +         + W    ++    +  L L+ W+ 
Sbjct: 360 GTGLVALAGFALPPLAALGRVPPLRVLRRDMLPIPSSSW----VIYGAALGALGLIMWRL 415

Query: 410 QLIWIV--------LIGIVVLFAMLAVVSVLVTRLLAKLPLNPAMALA-LSRINRSGAAS 460
            L  ++        ++  +VL  +L ++   + RLLA+  L   + L  L R   + A  
Sbjct: 416 SLDLVLTFALLGGGVVAALVLGGLLLLLLQSLRRLLARAALPWRLGLGQLLRHPLAAAGQ 475

Query: 461 GLQFGALALSLMLLAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTAS 520
            L FG + LS+ L+A   L+R +LL  WQ  LP+NAPN FALNI  ++K ++   L   S
Sbjct: 476 ALAFGLILLSMALIA---LLRGELLDTWQNQLPKNAPNYFALNILPNDKQAFTDKLLELS 532

Query: 521 IERSAAYPIMRGRLTHINGQEAKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEWQ 580
            + +  YP++ GRL  ING+ A ++         AL+R+L+LTWA  LP  N +  G W 
Sbjct: 533 AQSAPLYPVVPGRLISINGEPATEFVTKDSAGDRALQRDLSLTWAADLPAGNVVTAGTWW 592

Query: 581 SQN------GVSVEQEVASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFI 634
            Q       GVSVE +VA +L +KLGD L F +      A+V ++R++ W   +PNF+ I
Sbjct: 593 PQQPPDDIPGVSVEGKVAENLKIKLGDRLVFSVGGVNREAKVTSLREINWDNFQPNFFMI 652

Query: 635 FSPDVVQNLPVSYLISFRIQPEHDALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSV 694
           F P  +++LP +YL SF +   HD  +  LSR  P V+++ +  +  +++++L Q+  +V
Sbjct: 653 FQPGTLKDLPATYLTSFYLASGHDQQIVDLSRAFPAVTILQVEALLEQLRSILAQVTLAV 712

Query: 695 TVLAALGVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGL 754
             +    + AG+ ++F+ L+ +L +R ++  L R LGA R  ++     E+G++  V GL
Sbjct: 713 EYVLLFVLAAGMAVLFSGLQATLDERIRQGALLRALGAERPLLVKARRIEFGLLGAVSGL 772

Query: 755 VASVSADAVVAAVMKWGFSL 774
           +A++ ++ V   + ++ F L
Sbjct: 773 LAALGSELVSLVLYRYAFDL 792