Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., ABC transporter, permease, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  392 bits (1008), Expect = e-113
 Identities = 252/798 (31%), Positives = 429/798 (53%), Gaps = 21/798 (2%)

Query: 14  LRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSGNP 73
           LR    E+R GQL  +  A++L + ++  L  +++R++  I  +      AD V  S  P
Sbjct: 7   LRLFWRELRQGQLLLILFAISLAVLAVTGLARVSERLQVAISGEAAKFTAADRVVDSPQP 66

Query: 74  LPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRGEMRLSDGQQTFN 133
           L   LL          +    F +MA+S    QLVTV+AV ++YPL+GE+ L+DG     
Sbjct: 67  LSTELLARIDAIGLARADSMLFNSMAWSGDAFQLVTVRAVGNSYPLKGEIELADGPTGLL 126

Query: 134 HVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPSVYIHAS 193
             A   LW E R+   +G    +++ +GD  F ++ E+   P   FNPF   P V +   
Sbjct: 127 PEAGT-LWYEGRLAGLIGQS--ESLELGDRQFNLTKEIKRLPDAGFNPFASSPVVLMGLD 183

Query: 194 DVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQ--QVSLTASDRWRDQESG-SRTNEVFER 250
           DV  TG + PGSRV +    +GD + +  + +  +  LT+S R RD +SG S       R
Sbjct: 184 DVASTGIVGPGSRVTYLYQFSGDSAQLAELDELLKAELTSSQRLRDVKSGDSPIASAVAR 243

Query: 251 TQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLALQVGLLL 310
            +++L L   + I +A   + +  Q Y       +AM K+ GAS + +R   AL + L+ 
Sbjct: 244 AERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMFKTFGASAKEIRTLFALHLSLVT 303

Query: 311 VFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYG---LRPLWIALASSFLIAVPALGIPL 367
            F V++G + G+GL++++       LP  L +Y    LRP+ + + +  + A+     PL
Sbjct: 304 AFGVLVGILGGLGLDAVIAR----FLPPELTAYEAPLLRPVLLGVLTGSISALMFSAYPL 359

Query: 368 GRLLSVSAVAVMQ-PVTAQTRWQRNLLLIMVPIVPLLLVYWQN--QLIWIVLIGIVVLFA 424
            RLL++  + V+Q  +T ++        + +  + LL   +    QL   V++G ++L  
Sbjct: 360 LRLLAIPPLRVLQRELTGRSAGVWLHAALSLSAMALLGYAYSRSWQLTGAVVLGALLLGL 419

Query: 425 MLAVVSVLVTRLL--AKLPLNPAMALALSRINRSGAASGLQFGALALSLMLLAIIWLVRT 482
           +L  +  ++ RL   A L     + LAL+ + R  A + +Q    + +L+LL  I+ +R 
Sbjct: 420 ILFALGFVMIRLGHGAGLKTTNPLQLALAGLRRRAAQNSVQLVGFSTALVLLLTIFALRQ 479

Query: 483 DLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMRGRLTHINGQE- 541
           DLL DWQ+ LPE APN F +NIS  ++A     L    IER+  YP++RGRL+ ING+  
Sbjct: 480 DLLDDWQKQLPEGAPNFFLVNISPEDEAPMAEFLAENHIERTDIYPVIRGRLSAINGEAL 539

Query: 542 -AKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEWQS-QNGVSVEQEVASDLGLKL 599
            +++ ++ G      + RELN+TW + LP  N ++ GE+ +  +GVSVE +VA  LGLKL
Sbjct: 540 ISERQSEEGATGRVGIGRELNMTWRDSLPPNNRLIAGEFDNVADGVSVETKVAERLGLKL 599

Query: 600 GDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLISFRIQPEHDA 659
           GD+L+F+I++QT+  +V ++R+V W  M+PNF+ IFS + +     + ++SF +      
Sbjct: 600 GDSLSFVIDNQTLDVRVTSLREVRWETMQPNFFMIFSKEALAPFAYTSMLSFHLDEAKRP 659

Query: 660 LLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRLSLSQ 719
           L+  L +Q PTVS++D+  M A+++++++Q+  ++ V+ AL + +  L+++      +S 
Sbjct: 660 LVVSLIKQFPTVSVIDVGAMVAQLRSIVSQVSLALGVVLALVIASSSLVLWAQTEAGMSV 719

Query: 720 RQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADAVVAAVMKWGFSLTPSLH 779
           R++E+ + RT GA  R +      E+ V+  V G+VA V  +AV+  +  W F L  + H
Sbjct: 720 RRRELAVLRTFGAGGRLLRLATTLEFAVLGAVAGIVAVVVTEAVLYLLKTWVFELGVNWH 779

Query: 780 MALWFVLPALTFCTLAAV 797
           +  W   P L    +A +
Sbjct: 780 LQWWLQAPLLGAALVAVL 797