Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 841 a.a., ABC transporter, permease protein from Phaeobacter inhibens DSM 17395

 Score =  221 bits (563), Expect = 1e-61
 Identities = 215/805 (26%), Positives = 380/805 (47%), Gaps = 47/805 (5%)

Query: 11  RRLLRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTV--F 68
           +R LR  LS  R        + L L +A I  + +L   ++  + ++G   L  D    F
Sbjct: 14  KRELRGGLSGFR-----VFLICLALGVAVIAGIGSLRSAIQTGLSEEGAVLLGGDAELGF 68

Query: 69  VSGNPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRGEMRLSDG 128
                  E    + A+  ++ S++  F +MA       L  VKAVD AYPL G + LS G
Sbjct: 69  TYRRATAEEQAWMEARALAR-SEIIDFRSMATVGDERALTQVKAVDDAYPLVGTVILSPG 127

Query: 129 QQTFNHVASNQLW----LEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQ 184
                 +A    +    ++  + D+LG+ +GD  T+G   FV++  +  EP  +   F  
Sbjct: 128 LPLEAALAGTGDFPGGVMQRVLADRLGLSVGDEFTLGSQQFVLTALLENEPDAASAGFTL 187

Query: 185 MPSVYIHASDVDKTGAIQPGSRVQFSLFMT-GDDSAIESIKQQVSLTASD---RWRDQES 240
            P   +   D+ ++G +QPG+       +T   D+ +E +K +      +   RW D  +
Sbjct: 188 GPRTLVRTEDLAQSGLLQPGTLFSSKYRLTLPPDTDLEQLKTRAEAEYDNSGMRWTDARN 247

Query: 241 GSRTNEVF-ERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLR 299
           G+     F ER   +L L     + +    +    + Y++ +T TIA L++LGA RR + 
Sbjct: 248 GAPGIATFVERLAGFLVLVGLSGLAVGGIGVSAAVRAYLAGKTATIATLRTLGADRRTIF 307

Query: 300 RWLALQVGLLLVFAVVLGSVIGVGLESLLRLPL-KDLLPDPLPSYGLRPLWIALASSF-- 356
               LQ+G L +  V +G VIG GL  +L  PL    LP P   +G+    ++ A+ +  
Sbjct: 308 LTYFLQIGALALLGVAIGLVIG-GLAPVLLGPLIAAQLPFPAV-FGISVSALSEAALYGL 365

Query: 357 LIAVPALGIPLGRLLSVSAVAVMQP-VTAQTRW--QRNLLLIMVPIVPLL----LVYWQN 409
           L A      PL R   + A A+ +  + +++RW   R +L  +V +  L+    L     
Sbjct: 366 LTAFVFALWPLARAERIRAAALFRDALDSRSRWPASRYILATVVAVAVLIGAAALFSGAV 425

Query: 410 QL-IWIV--LIGIVVLFAMLAVVSVLVTRLLAKLPL-NPAMALALSRINRSGAASGLQFG 465
           +L +W    LIG + +  + A+V   + R  A L   NPA+  ALS I  S   +     
Sbjct: 426 ELTLWTAGGLIGALAVLLLAALVLGWIARRSAPLARGNPALRWALSAIGTSRDGAVPTVL 485

Query: 466 ALALSLMLLAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDT-ASIERS 524
           AL L L +LA I  V  ++    +  LP+ AP+ F ++I   +   +LA ++   +++R 
Sbjct: 486 ALGLGLTVLAAIGQVDGNMRRAIEGNLPDVAPSYFFVDIQRDQMPDFLARVEQDPAVDRV 545

Query: 525 AAYPIMRGRLTHINGQEAKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEWQSQN- 583
            + P++RG LT INGQ A + A +       +R +  +T+A + P+   I+ G W +++ 
Sbjct: 546 QSAPMLRGVLTTINGQPATEVAGDHW----VVRGDRGITYAAKQPETTQIVAGTWWAEDY 601

Query: 584 ----GVSVEQEVASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDV 639
                VS  +E A +LGL LGDTLT  +  + ++A + ++R+V++      F  + + + 
Sbjct: 602 SGPPQVSFAREEAEELGLDLGDTLTINVLGRDITATITSLREVDFSTAGMGFVMVLNENA 661

Query: 640 VQNLPVSYLISFRIQPEHDA-LLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLA 698
           +   P SY+ +   + E +A +L  L+R  P ++ + +R    ++  +L Q+  +    A
Sbjct: 662 LAGAPHSYIATVYAEQEAEAQILRDLARAMPNITAVRVRDALDRVSEILRQLASATAYGA 721

Query: 699 ALGVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASV 758
           A  +L G +++          R+ E  + +TLGASRRR++ +       +    GLVA +
Sbjct: 722 AATLLTGFMVLIGTAAAGEPARRYEAAVLKTLGASRRRILISFALRSVFLGAGAGLVALI 781

Query: 759 SADAVVAAVMKWGFSLTPSLHMALW 783
           +  +   A+  + F    S +  +W
Sbjct: 782 AGMSGAWAINTYVFE---SDYQVIW 803